| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5788 |
|---|
| Symbol | |
|---|
| ID | 5320090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 759140 |
|---|
| End bp | 760126 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640777493 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001314425 |
|---|
| Protein GI | 150377830 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00267087 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAC CGCTGCAAAA GACGCCGGCA TTGACCGTTG ACCACCTGGT CAAGACATTC
GATGTGTCCG CTCCCTGGCT CAACCGTGTG GTGGAGCGCA AGCCCCGGCA GTATCTGCAA
GCCGTGAACG ATATCAGCTT CACCGTGCCC GCCGGGGGCT GCCTCAGCAT CGTCGGCGAG
AGCGGCTGCG GAAAATCCAC CGTTGCCCGC CTTGTCACCG GCCTGCACCG TCCGACCAGC
GGCGCAATGC GCTTCGCGCC CGGAAAGAGC GGCGCGGCCC TTTCGGCGCA GATGATCTTT
CAGGACCCCT ACGCCTCGCT CAACCCGCGA TGGCGGGTGA AGAATATCGT TGCCGAACCG
CTGCGCGAAA TGAAGCTGCG CAAGACCGCC GCCGAAGTCA CCGAGCGTGT GGAAGAGCTT
CTGCACACGG TCGGGCTATC GCCATCCGAC GGTGAGAAGT TCCCGCACGA ATTTTCCGGT
GGTCAGCGCC AGCGCATCTC GATCGCGCGC GCGCTGGCAA GCGAGCCGGA ATTCCTGGTC
TGCGACGAGC CGACCTCGGC GCTCGACGTG TCGGTGCAGG CACAGGTGCT TAACCTGATG
CGCCGTTTGC AGGACGAACT GGGGCTGACC TATCTCTTCA TCAGCCATGA TATGAGCGTC
GTTCGCCAGA TGTCGGACCG CATCGCGGTG ATGTATCTGG GCCGCATCGT GGAGGAGGGC
GACACGGAGC AGCTGTTTGC CGAGCCGCGT CATCCCTACA CGCAGCTCCT GCTGCAGACG
ATTCCGAACA TCGCGGCGCC GAACCGCAAC CGGGAGCCCG CCAGCGGCGA AGTGCCGAGC
CCGCTGAAGC CGCCGTCCGG CTGTGCCTTC CACCCGCGTT GCCCGGTGGC CATCGGGCGC
TGCTCCAAGG AAGTGCCTGA GGTGCGGGTC TTGCCCAACG GTACCCGTGT GACCTGTCAT
CTGGTTGAGG ACGGGTTAGC GAAATGA
|
|---|
| Protein sequence | MTKPLQKTPA LTVDHLVKTF DVSAPWLNRV VERKPRQYLQ AVNDISFTVP AGGCLSIVGE
SGCGKSTVAR LVTGLHRPTS GAMRFAPGKS GAALSAQMIF QDPYASLNPR WRVKNIVAEP
LREMKLRKTA AEVTERVEEL LHTVGLSPSD GEKFPHEFSG GQRQRISIAR ALASEPEFLV
CDEPTSALDV SVQAQVLNLM RRLQDELGLT YLFISHDMSV VRQMSDRIAV MYLGRIVEEG
DTEQLFAEPR HPYTQLLLQT IPNIAAPNRN REPASGEVPS PLKPPSGCAF HPRCPVAIGR
CSKEVPEVRV LPNGTRVTCH LVEDGLAK
|
|---|
| |