| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5770 |
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| Symbol | |
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| ID | 5320072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 737068 |
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| End bp | 739362 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640777477 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001314409 |
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| Protein GI | 150377814 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0457] FOG: TPR repeat |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0786479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.562645 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGCGGT TTGTCCACGC AGCGACAGTT ATCCGGACAG CTTTGCTGTT TGGCGCCCTG
CTCGCGTATG CCGCACCGGT TGGGGGTGCC GAGACGGCTC CGCCTTATGC TGCGGACCAG
CTAATCGCAC CCCAGAAGGG ATTCGTCGAC GAGAAGACGT GTACCTCCTG CCATGCGGAA
CAGGCCGCGG CATTCGCTAA GTCGCACCAC GCCAAGGCCA TGGCCCTTGC CGATGACAAA
TCGGTGCGCG CCGATTTCAA CAGCGTCCGG TTCGAGCGCG ATGGCGTGGC GGCAGAGTTC
TTCCGCCGCA ATGGTCGCTT CTTCATTCGC ACCGAAGGGC CGGGCGGCAA GCAGGCGGAC
TTTGAGGTCA AATATACCTT CGCATACGAA CCCCTGCAGC AGTACCTGGT CGATATCGGC
CACGGGCGAT TGCAGGCCTT TGATATCGCC TGGGACACTC AAAAACAGGA ATGGTTCTGG
CTGGGTGAAG GCAGTGCGGC AAAACCTGGC TCAACCTTTC ATTGGACGGG CCCGTTCTAT
CGTTGGAACC GCACCTGCAT CGACTGTCAT TCCACCGGTC CGCAGACCAA TTTCGAGCCG
CAGACGAACA AATACCAGTC GTCCTATGTC GCCACCAGCA TTGGCTGCCA GTCCTGCCAC
GGCGGCGGTG CGAAGCATGT CGAATGGGCC AGAGCCAAAG CGGCAAACGC TTCAGCGGCG
GCGGCAGATC CCGGCCTCGC AGAGGTTGAC GCGAACACCT GTTTCGCCTG TCACGCCCGA
CGCACTAGAC TGGTCGATGG CTATCGCCCG GGAAGCGCGT TTCTCGACCA GTTTTCTCCT
GCATTGCTTC GCAGCGATCT CTATTTTCCG GACGGGCAGA TACTGGACGA GGTTTTCGAA
TACGGCTCCT TTCAGCAAAG CAAGATGGCA AAGGCAGGCG TCACCTGTTT CGACTGCCAC
CGGGCGCACG AGGGTACCGT CAAAACTGAG GGCAATGCGT TGTGCACGCA ATGCCACGCC
GAGACTGCCC CGGAACGTTT TGCAGGCAAC AACCCGAGCG GCGCGTTTGA CACCCCGGCA
CACACGCATC ATCCCCAAGG CTCCTCCGGC GCTTTTTGTG CCAATTGTCA CATGCCGGAG
CGCACTTACA TGAAGGTCGA TCCCCGGCGC GATCATTCTT TCGTTATCCC CCGGCCGGAT
CTTTCCGCAC TCTACGGAAC GCCGAATGCC TGCATTTCGT GCCATGCGAG CCAAACGAAC
GCCTGGGCGT CCGAGCACCT GGACGGGTGG TATGGCAAGG CATGGCGTGA ACGCCCGTCG
ATTGCGCATG CATTCGCGCG AGCCGCGCAG AACGATGTTG CCGCGATTGA AAGTCTGCGC
AGATTTCTGA CCGATCGGGA ACAGCCGGGC ATCATCAGGG GCAGCGCGAT CGGTGAAATG
ACAAGGCTCG ATGGAGCAGC CACCGCAGCG GATGTCAGAG TGGCCGCGGG CGATCCCGAT
CCGCTCGTTA GGATGGGGGC GGCGGAGGCG GCTGCCAACT TGTCAGCCGA CTTGCGATTG
GACGCGATCG GCGGCCTGCT TACGGACGAG ACCCGGGCCG TCCGAGTGGC CGCCGCCAGG
GTTCTTGGCG CCACGCCGTC ACTGGACGTT CTCGGCGCGC AACGCCGCGC TTTCGACGCC
GCACTCGGCG ATCTCAGTGC CTATGTAGAG GCTAACGCGG ACGTCGCCGA GACGCAGAGC
AGCTACGGAT CCCTACTTTT CGGCCAAGGG CGAACGGACG AGGCGGAAAA GGCTTTCCGC
CAAGCGATCG TTCTTGATCC GACGCTTTCT GGTGCGCACA TCAATCTTGC CGAGTTCTAT
CGCGCCAGCG GTGACAATGA GCGATCCGAG CAGACTTACG CCGAGGCGGT CGCCGCAAAT
CCGGATCGGG CAGATCTTCG CTACGGACAC GGCTTGTCTC TCGTTCGCCT CAAGGCCATG
CCGGACGCAA TTGAAGAACT AACGGCGGCC CTGCGCTTGG ATCCTGCCAA CTCCCGTTAC
AGGACGACCG CAGCGATCGC GCTTGATTCC GTGGGCCGAA CGGATGATGC GTTCGCTCTG
TTCGGCCCCA CCACCGCCGG TGGTGCAACT GTTGACGCCA CTCTGCTCGG CACTGCCATT
CAGCTCGGAC TTAAACTTGG TCGCTATGCC GACACGCTTA GGTTTGCGGA GGCGCTCGCT
CGTCTTCAGC CGAACGATCC ACAGATTGAA GAACTTGTCA GGCAATTACA GGATGCTGTT
CAACATGGCA GATAA
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| Protein sequence | MKRFVHAATV IRTALLFGAL LAYAAPVGGA ETAPPYAADQ LIAPQKGFVD EKTCTSCHAE
QAAAFAKSHH AKAMALADDK SVRADFNSVR FERDGVAAEF FRRNGRFFIR TEGPGGKQAD
FEVKYTFAYE PLQQYLVDIG HGRLQAFDIA WDTQKQEWFW LGEGSAAKPG STFHWTGPFY
RWNRTCIDCH STGPQTNFEP QTNKYQSSYV ATSIGCQSCH GGGAKHVEWA RAKAANASAA
AADPGLAEVD ANTCFACHAR RTRLVDGYRP GSAFLDQFSP ALLRSDLYFP DGQILDEVFE
YGSFQQSKMA KAGVTCFDCH RAHEGTVKTE GNALCTQCHA ETAPERFAGN NPSGAFDTPA
HTHHPQGSSG AFCANCHMPE RTYMKVDPRR DHSFVIPRPD LSALYGTPNA CISCHASQTN
AWASEHLDGW YGKAWRERPS IAHAFARAAQ NDVAAIESLR RFLTDREQPG IIRGSAIGEM
TRLDGAATAA DVRVAAGDPD PLVRMGAAEA AANLSADLRL DAIGGLLTDE TRAVRVAAAR
VLGATPSLDV LGAQRRAFDA ALGDLSAYVE ANADVAETQS SYGSLLFGQG RTDEAEKAFR
QAIVLDPTLS GAHINLAEFY RASGDNERSE QTYAEAVAAN PDRADLRYGH GLSLVRLKAM
PDAIEELTAA LRLDPANSRY RTTAAIALDS VGRTDDAFAL FGPTTAGGAT VDATLLGTAI
QLGLKLGRYA DTLRFAEALA RLQPNDPQIE ELVRQLQDAV QHGR
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