Gene Smed_5665 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5665 
Symbol 
ID5319967 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp632333 
End bp633421 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content61% 
IMG OID640777397 
Producthypothetical protein 
Protein accessionYP_001314329 
Protein GI150377734 
COG category[R] General function prediction only 
COG ID[COG0628] Predicted permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGAAA TGCGTAGTGA TCACGGTCAG CACCAGAAAA TCATCGAGAT CGCCCTGGCA 
TTGCTGCTGG TGTCCATACT GATTGCCGCG ACCTTCTGGG TATTGCTACC CTTTGTCGGG
GTCCTGACCT ATGCGGTCAT TCTTGCCACA GCCACGGCTG GGTTGTTTGA TCGCATGGTT
GACCTGCTGA ACGGAAGGCG CCGCCTGGCT GCGGTGATAT TCGGCGCTGT CGCCGCGACT
ATTACCGTCG TGCCGCTGAT CTTCCTATGT TCTTCGGTTG CCAGCCAGTT GGGCGTTGCC
GGAGCGTGGC TGAGTGCAGC GAGCACCCGC GGAATCCCCA ACCTGCCCGA GTGGGTTGCA
GGACTTCCGC TGGTCGGAAG CAAGGCAGCG GCAGCGTGGC AGGAACTGCA GCGCGAAGGC
TTGGAGTTGT TGGAGCGGTA TCAACCCCAG CTCGCCGCTG CGGGGCGCTG GCTCCTCAAT
CTCGGGACGG GTCTTTTGCT GGCTGTCCTT GAAATTTTCG TGGGTGTCGT GTTGGCCGCG
ATATTTCACG CATCGCGCAC CTGGGCGTTG GGTTTTGTAT CGGCCATCAT GGTACGCATC
GTCGGGCCAA AGGGGCCGGA ACTGCTGAGT GCCGCGGGAA AGGCCATAAG CGGCGTTGCA
ATCGGCGTAA TTGGAACGGC CCTGCTCGAG GGCGTGTTGG CCTGGATCGG CTTCGTAATC
GCCGGCGTTC CTGGAGCGGT TGCCTTGGCC GCCGCAACGT TCTTTCTGGC GGTGATTCAG
ATTGGACCGC TTCTGGTGTG GTTGCCGGTG GCGATCTGGC TGGGCGCCGA GGGACAGACC
GGTTGGGCGA TTTTCATGGT TGCATGGGGG ATCATTGTGC TCATGGGCAC AGACAATATC
GTCAAGCCCA TGCTGATCGC GCGTAGCGGC CAGTTACCGA TGCTCGTGCT GTTCATCGGG
GTCATCGGCG GCCTGGCAGC ATGGGGCTTT ACCGGCATGT TTATCGGCGC GACGACGCTG
GCAGTGCTTT GGACTGTGTT GCAGGCTTGG CTCGGCACTA ACAAGGGGCC AGTCTCTGCC
ACCTCCTGA
 
Protein sequence
MQEMRSDHGQ HQKIIEIALA LLLVSILIAA TFWVLLPFVG VLTYAVILAT ATAGLFDRMV 
DLLNGRRRLA AVIFGAVAAT ITVVPLIFLC SSVASQLGVA GAWLSAASTR GIPNLPEWVA
GLPLVGSKAA AAWQELQREG LELLERYQPQ LAAAGRWLLN LGTGLLLAVL EIFVGVVLAA
IFHASRTWAL GFVSAIMVRI VGPKGPELLS AAGKAISGVA IGVIGTALLE GVLAWIGFVI
AGVPGAVALA AATFFLAVIQ IGPLLVWLPV AIWLGAEGQT GWAIFMVAWG IIVLMGTDNI
VKPMLIARSG QLPMLVLFIG VIGGLAAWGF TGMFIGATTL AVLWTVLQAW LGTNKGPVSA
TS