| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5662 |
|---|
| Symbol | |
|---|
| ID | 5319964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 628249 |
|---|
| End bp | 629883 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640777394 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001314326 |
|---|
| Protein GI | 150377731 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.76313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAA GACAGACTGG TACTTTGAAG CCGACGCGCC GCGCGTTTTT GCTTTCCTCC
GTTGCACTCG CGACCGCTAT TGCCGTGCCA TTGCTGCCGG TACCTTCGTT CGCCGCCGCC
GAAGAGCCGG CGCGCGGCGG CAGCGTGTCG ATCAATATTG GCACCGAGCC GCCGGTTCTG
GTGCTCATCG CTCACAGTGC CGGCGCTGCC TATTACATTA GCGGCAAGGC AACCGAGAGC
CTGCTGACCT ATGACAAGGA GTTCAATCCT CAGCCGTTGC TCGCCACCGA GTGGACGGTG
AGCGAAGACG GCCTGCGCTA CTGGTTCAAG CTGCGCCAGG GCGTTCGTTG GCACGACGGC
AAGGATTTCA CCGCCGAAGA CGTCGCCTTC TCGATCTTGG CGCTGAAGGA AAACCATCCG
CGCGGCCGCG CGACCTTTGC CCATGTGAAA GAGGCCAATG TTCTCAATTC GCATGAGGTG
GAACTGGTCC TTGCCAAGCC GGCACCCTAC CTGCTGACGG CATTTGCAAG CTTTGAGGCG
CCGATCGTTC CCAAACATCT CTACGAGGGC ACGCAGATTG CGGAGAACCC GCACAACGTC
GCGCCGATTG GCACCGGCCC CTACAAGTTC GTCGAATGGG TTCGCGGCAG CCACGCACTT
TTCGTGCGCA ACGAAGACTA TTGGGGTTCG CCCAAGCCTT ACCTCGACCA GATCATCTTC
CGGTTCATCG TCGATCCCGC CGCAGCTGTG GCCGCGATTG AGACCGGCGA GGTGCAGGTC
TCGACGGCCA ACCTGCCGCT GACCGATATC GACCGCCTGA AGGCCAATCC GAACCTCGTC
GTCGATACCG ACCCGGCGCC GTATTCACCG AGCATTGCCC GCGCGGAGTT TAACCTTGAG
AACAAGTATC TGGCCGACAT CAAGGTGCGA CATGCGATCG CGCATGCGAT CGACAAGGAT
TTCATCGTCA ACACCGTCTA CCTCGGCTAC GCCACCCGCC TCGACGGACC GGTCAGCCCC
GACCTTGCGA AGTTCTACTC GCCGGACCTT CCCAAGTACG AGTTCGACCC GGCGAAGTCC
GAGAAGCTTT TGGATGAGGC AGGTTACTCG CGCGGCGCCG ATGGTGTTCG CTTCAAGCTA
TTCATCGATC CGACCCAGCC GTCCGGTCCT CCCAAGCAGA CCGCGGAATA CATCGCACAG
GCGCTTGCCA AGGTCGGCAT CAAGGTGGAA CTGCGAACGC AGGACTTCGC GACTTTCGTC
AAGCGCGTCT TCACTGATCG AGACTTCGAC ATCGCCATCG AGGGCATGAG CAATCTCTAC
GACCCGACCG TCGGCGTCCA GCGCCTCTAC TGGTCGAAAA ACTTCAAGCC GGGCGTCCCC
TTCACCAATG GTTCCAAATA TTCGAATCCC GAAGTCGACC GGCTGCTCGA AACGGCCGCC
GTCGAGATCG ACCCGAAGAA GCGGTTGGAA CTCTTCAACG AGTTCCAAAA GCTGGTGGTG
GAGGACTTGC CGACGCTCGA TATCGTCACG CCGGCGGTGA TCACCGTCTA CGACAAGCGG
TTGAAGAACC TGAAACTTGG TGTCGAGCAT CTCTGGGGCA ACGGGGCGGA CATCTATCTC
GACGGACAAT CGTAA
|
|---|
| Protein sequence | MTSRQTGTLK PTRRAFLLSS VALATAIAVP LLPVPSFAAA EEPARGGSVS INIGTEPPVL
VLIAHSAGAA YYISGKATES LLTYDKEFNP QPLLATEWTV SEDGLRYWFK LRQGVRWHDG
KDFTAEDVAF SILALKENHP RGRATFAHVK EANVLNSHEV ELVLAKPAPY LLTAFASFEA
PIVPKHLYEG TQIAENPHNV APIGTGPYKF VEWVRGSHAL FVRNEDYWGS PKPYLDQIIF
RFIVDPAAAV AAIETGEVQV STANLPLTDI DRLKANPNLV VDTDPAPYSP SIARAEFNLE
NKYLADIKVR HAIAHAIDKD FIVNTVYLGY ATRLDGPVSP DLAKFYSPDL PKYEFDPAKS
EKLLDEAGYS RGADGVRFKL FIDPTQPSGP PKQTAEYIAQ ALAKVGIKVE LRTQDFATFV
KRVFTDRDFD IAIEGMSNLY DPTVGVQRLY WSKNFKPGVP FTNGSKYSNP EVDRLLETAA
VEIDPKKRLE LFNEFQKLVV EDLPTLDIVT PAVITVYDKR LKNLKLGVEH LWGNGADIYL
DGQS
|
|---|
| |