Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5622 |
Symbol | |
ID | 5319924 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 589152 |
End bp | 590147 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640777365 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_001314297 |
Protein GI | 150377702 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0882363 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.711576 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAATG AACCATTGTT GTCCGTCAAG AATCTGACGG TTGATCTGCT GACCGCGAAA TCCGCGCTGC GCCCGGTTGA CGGTGTCAGT TACGCGATCC GGCAGGGTCA GTGTCTCGCC ATAGTCGGCG AAAGTGGTAG CGGCAAGACC GTGATGAACT TCGCCCCGCT CGGCCTGATG CCAACGGGCG TGGCGACGAA TCTCTCCGGC TCGGTACGGT TCGAGGGGCA GGAGCTGATC GGCCTCTCCG AGCCGGAAGT CCGCAAGTTG CGCGGCAAGT CCATCGGGTT CATCTTCCAG GATCCGATGA GCGCGCTTAA CCCGGTCAGA CGTATCGGGC GGCAGATCGC CGAAATGGCG GAGCTGCATC TCAACATGAG CCCTCGCGCA GCAGAGGCGA GGGCACTCGA CCTCGTCAAA CTTGTCGGAA TCTCAGATCC TGCCGCTCGG CTGAGTCAAT ATCCGCACGA ATTGTCGGGC GGCCTAAGAC AGAGGATCGT CATTGCTATT GCACTTGCTG GAGAGCCGAA GCTGCTCATC GCCGACGAGC CGACGACTGC CCTCGATGTC ACGGTGCAGG CACAGATTCT CCGCTTGCTG AAGGACCTGC AGCAGCGCCT GAACATGGCG ATGGTCTTGA TCACCCACGA CATGGGCGTC GTCGCCGGTG CGGCCGACAA CATCGTCGTC ATGTATGCGG CACGGGCTGC CGAATGCGGG CCGGTGGACA AGGTCCTCGT CAATCCTCGT CATCCCTACA CAAGGGGCCT GATCAACGCG ATTCCGAGGC GCGACGATCC GATCGGCTCC GAATTCCGGG GGCTGCCCGG TGTGCCCCCA ACGCTCGGCG CACCCATCCA GGGCTGCGCT TTCGCGCCGC GCTGCGAGTT CGCAGTGGCC GCATGCACTC GGGCGCGCCC ACCAATGGTC CCAACCGCCG ACAGCAATGT TTGCGTAGCC TGCCCTGTCG TCAACCAAGG AAAGGCTGCG GCATGA
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Protein sequence | MQNEPLLSVK NLTVDLLTAK SALRPVDGVS YAIRQGQCLA IVGESGSGKT VMNFAPLGLM PTGVATNLSG SVRFEGQELI GLSEPEVRKL RGKSIGFIFQ DPMSALNPVR RIGRQIAEMA ELHLNMSPRA AEARALDLVK LVGISDPAAR LSQYPHELSG GLRQRIVIAI ALAGEPKLLI ADEPTTALDV TVQAQILRLL KDLQQRLNMA MVLITHDMGV VAGAADNIVV MYAARAAECG PVDKVLVNPR HPYTRGLINA IPRRDDPIGS EFRGLPGVPP TLGAPIQGCA FAPRCEFAVA ACTRARPPMV PTADSNVCVA CPVVNQGKAA A
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