Gene Smed_5603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5603 
Symbol 
ID5319905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp572428 
End bp572781 
Gene Length354 bp 
Protein Length117 aa 
Translation table11 
GC content61% 
IMG OID640777348 
Productprotein of unknown function DUF861 cupin_3 
Protein accessionYP_001314280 
Protein GI150377685 
COG category[R] General function prediction only 
COG ID[COG3450] Predicted enzyme of the cupin superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.919827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.384238 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTCT TGAAAACCAT CGAGACCAAC CCTTCTTTCG CGCCGCGCGA GTCCAGCCCG 
CTCCCCGACC GTCTGATCTC CGGCAATCCT ACCTTCAAGA CCTGGGCACA GGACGTCGCC
CGCGGCGAGA TAGTCCACAC CGGCGTCTGG GAAGCGACAC CCGGCGAGAC GCGCTCGATC
AAGGGGGAGA CCTTCGAGTT CTGTCACATT CTTTCCGGTG TCGTCGAACT CACGCCGGAA
AACGGGGAGC CGGTCGTCTA CAAGAGCGGC GACAGCTTCG TCATGAAGCC GGGTTTCGTC
GGCATCTGGA AGACAATCGA GACGGTGCGC AAGATCTACG TGACCGTGAT GTGA
 
Protein sequence
MSLLKTIETN PSFAPRESSP LPDRLISGNP TFKTWAQDVA RGEIVHTGVW EATPGETRSI 
KGETFEFCHI LSGVVELTPE NGEPVVYKSG DSFVMKPGFV GIWKTIETVR KIYVTVM