| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5594 |
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| Symbol | |
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| ID | 5319896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 560644 |
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| End bp | 562251 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640777339 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001314271 |
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| Protein GI | 150377676 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.459863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.392289 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGACA TCACCAATTG GACCAGATCT GACGACGCTA TGATCGAAAC CGCCATTCGT
CGCGGAGCGA CGCGCCGCGA ACTCCTGCAG ATGATGCTGG CCGGCGGTGC TGCCCTCTCT
GCCGGCAGTC TGATGCTCGG CCGAGCCGGC AATGCGGTTG CCGCAACGCC GGTGGCCGGC
GGTACGCTCA AAGCGGCCGG CTGGTCGGCT TCCACCGCCG ACACGCTGGA CCCGGCCAAG
GCATCGCTCT CCACCGACTA TGTCCGCTGC TGCTCCTTCT ACAACCGACT CACCTTCCTC
GATAAAGGCG GCACGCCGCA GATGGAACTG GCCGAAGCTA TCGAGACCAA GGATGCCAAG
ACCTGGACCG TCAAGCTGAG GAAGGGCGTT ACCTTCCATG ATGGCAAGCC GCTGACAGCC
GACGACGTGA TCTTCTCGCT GAAGCGCCAC CTCGACCCGG CGGTCGGTTC AAAGGTCGCC
AAGATCGCCG CGCAGATGAC GAGCTTCAAG GCGGTGGACA AGCAGACGGT CGAGATCACG
CTCGCGAGCC CGAACGCCGA CCTGCCGACG ATCCTCTCGA TGCACCACTT CATGATCGTC
GCCGACGGCA CCACCGACTT CTCGAAAGGG AACGGCACCG GCGCTTTTGT GAGAGAAGTC
TTCGAGCCCG GCGTGCGCTC CGTCGGCCTC AAGAACAAGA ACTACTGGAA GTCCGGACCG
AACGTCGATT CCTTCGAGTA CTTCGCCATC AGCGACGACA GTTCCCGGGT GAATGCGCTC
TTGTCCGGCG ACATCCACCT TGCCGCCACG ATCAATCCGC GCTCCATGCG CCTGGTCGAG
AGCCAAGGCG ACGGCTTCGT CCTCTCGAAG ACGACCTCCG GCAACTACAC CAACCTCAAC
ATGCGGCTGG ACATGGAACC CGGCAGCAAG CGCGACTTCG TCGAAGGCAT GAAGTACCTC
GTCAACCGCG AGCAGATCGT CAAGTCGGCG CTTCGGGGTC TAGGCGAGGT CGGCAACGAC
CAGCCGGTGT CCCCGGCCAA CTTCTATCAC AATCCCGACC TGAGGCCGCA CGCCTTCGAC
CCCGAGAAGG CGAAGTTCCA CTTCGAGAAG GCCGGCATGC TAGGCCAGTC GATCCCGGTG
GTTGCCTCCG ATGCAGCGAA CTCCGCGATC GATATGGCAA TGATCATTCA GGCCTCCGCT
GCCGAAATCG GATTGAAGCT CGATGTGCAG CGCGTTCCCG CAGACGGTTA CTGGGATAAT
TACTGGCTGA AGGCGCCGAT CCACTTCGGC AACATCAACC CGCGCCCCAC GCCGGATATC
CTGTTCTCTC TGCTCTACTC CTCGGAGGCT CCGTGGAACG AGAGCCAATA CAAGTCGGAG
AAATTCGATA AGATGCTGAT CGAAGCGCGT GGCTCGCTCG ACCAGGAGAA GCGCAAGGCG
ATCTACAATG AGATGCAGGT GATGGTCGCC AGTGAAGCCG GCACCATCAT TCCGGCCTAT
ATCTCCAACG TCGACGCGAT CACCGCCAAG CTCAAGGGCC TGGAAGCCAA TCCGCTTGGC
GGGCAGATGG GTTATGCTTT TGCGGAATAT GTCTGGCTCG AGGCCTGA
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| Protein sequence | MNDITNWTRS DDAMIETAIR RGATRRELLQ MMLAGGAALS AGSLMLGRAG NAVAATPVAG
GTLKAAGWSA STADTLDPAK ASLSTDYVRC CSFYNRLTFL DKGGTPQMEL AEAIETKDAK
TWTVKLRKGV TFHDGKPLTA DDVIFSLKRH LDPAVGSKVA KIAAQMTSFK AVDKQTVEIT
LASPNADLPT ILSMHHFMIV ADGTTDFSKG NGTGAFVREV FEPGVRSVGL KNKNYWKSGP
NVDSFEYFAI SDDSSRVNAL LSGDIHLAAT INPRSMRLVE SQGDGFVLSK TTSGNYTNLN
MRLDMEPGSK RDFVEGMKYL VNREQIVKSA LRGLGEVGND QPVSPANFYH NPDLRPHAFD
PEKAKFHFEK AGMLGQSIPV VASDAANSAI DMAMIIQASA AEIGLKLDVQ RVPADGYWDN
YWLKAPIHFG NINPRPTPDI LFSLLYSSEA PWNESQYKSE KFDKMLIEAR GSLDQEKRKA
IYNEMQVMVA SEAGTIIPAY ISNVDAITAK LKGLEANPLG GQMGYAFAEY VWLEA
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