| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5524 |
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| Symbol | |
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| ID | 5319826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 489240 |
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| End bp | 491630 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777277 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001314209 |
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| Protein GI | 150377614 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.536522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGACA TGGTCATGGT CGCGTCGGAG AACGAAAGAC TTCGGCGCTG CATGAACGAT
ATCCTGAGTG TCACGGCTCT TCCGGCAGCT TGGACTGGCG GGACTGTCGA CGGGATTTGC
AGCGCCCTGC TTGATGCATT GAGATCGATC CTTGACGTTG ACTTCTTGGT CGTCAACGTT
GCTGGGAGCG GCGATCAAGC CGAAGTGCTC AAGGAGCGTT CCAGGACGAA CTTCGTCGAC
GCAGGTGCCG TAATCATCAG CGACTTGGTG AGGACGTTGG GGGCCAACAT AGCTGTCTGG
CCCTGCGAAA CCAACGTCGA GCACGGTGAG TCCGACCTGC GGGTGCTGAT CGAGAAGCTT
GGCGTGAATG GAAAAGTGGG CGTTCTCGTC GCCGGATCGA CGGTATCGTC GTTTCCCACC
GAAGAGGACC GCATCCTCCT GCACGTCGCA GCTTGTCAGG CTGCCCTTGC GATCACGGAA
GCAATCCGCT TTCGGGACGA CACACGCGCC GTTGCGGAAC GCGAACTTAA TAGAATCGCG
GACGCCATCC CGGTCATGGC CTGGTCGACA CTTCCCGACG GCCGAGCCGA TTTTTTCAAC
GAACACTTCC TGACTTTTCT CGGGATATCG AGCGAGCAAG CGGCGGGATG GGGATGGGCT
GCATCGATCC ACCCGGACGA CTCTCGGGCG CTACAAAGCG TATGGATGGA GCTACTCGCC
TCAGGGATGC CGGGTGAAAC CGAAGCGCGG CTTCGACGAT GGGACGGGCA ATACAGGTGG
TTTTTGTTCC GGGCCAACCC AGTCTACAGC GACGAAGGAG CGGTTGTTCG GTGGTACGGG
ACCAACACCG ACATAGACGA CCGAAAACGG TTTGAAGAAG AAATGCGCCG TAGTGCGGCG
CTGATGGCCC AGGCCCAGCG CCTGACAGTG ACAGGCAGCG TCTGGTGGAG GCCCGCAACC
AACGACATAT ACTGGTCCGA TGAGGCATAC CGTGTGGCGG GGCAGGACGT GGGAATTACC
CCCTCCGTGG AGATGATGCT GGATCGCTGC CATCCCGAGG ACCTACCCAG AATCCAAAAA
CTGATCTCAA ATGCGATGAA CCGCGGAGAG AATGTCGATG TAGAGCATCG GCTTTTGATG
ACGGATGGTG CTGTAAAGTA TGTCCATGTC GTCCTTCAAA ACATCGGCAA TAATCCCGCC
GATCCGGAGT TCATCGGTGC GGTCGCAGAT ATCACCGAGA GAAAGCTCGC TGAGGAGCAA
CTGCGCCGGA GTGACGTCCT GCTACGCGAA GGGCAGCGAA TTAGCCAAAC AGGTACGTTT
TCCTGGAAGG TGGAGACTGA CGAAATAACC TTCTCGGAAG AACTGAATCG CATCTTCGGT
TTCGAAAGTG GCCGCGTGGT CGATTTCGAC GCAATTGGCC AGAGAGTCTA CGAGGAGGAT
CTGCCGCTTC TTGCAATTAA AATGGCCGAT GTTCGGCAGG GAGGCGACAA TCCCGACTAC
GAGATACGAC TGTTCGTCGA TGGCCAAATC AAACATGTCC GGGTGGTTGG ACGGATAATC
AGGCACCTCG ATGGCACGAT GGAATGCATA GGGGCAGTCC AAGATGTCTC GGCCCAGCGG
ATAGCAGAAC TGGGTCGCGA CAAGCTGCGC TCCGAACTGA GCCAGTTGGC CAGGGTGACG
AGCCTCAGCA CAATGGCAGC ATCCATAGCG CACGAAGTTA ATCAGCCGTT GGCTGGCATC
ATCATGAACG CGAGCGCTTC ACTGCGAATG TTGTGCGCAA ATCCTCCGAA TATTACTGGG
GCCGTCGAGA CGGCAAAAAG AACTATCCGA GACGGCAATC GAGCATCGGA CGTCATACTG
CGACTGAGGA ACCTGTTCAA ACGGGGTGTG GCGACCGTCG AGTGGTTGGA TCTCAACGAC
GCCATTCGAG AGCTGATAGG GCTGGCCGCC AGCGACCTGC AAAGAGGAAG AATTCTATTA
ATTGAGGAAC TTGCCGATCC GCCGCCCTTT GTCCTCGGAG ACAGGGTGCA ACTCCAGCAA
GTAATAATGA ACCTCCTTCG TAACTCGATC GATGCGATGA CCGATACTGC CCAAACGCAG
AAGAAGATAT TCGTTCGCAC GGTCGTGGGC CTTGGCGAGG TCAGAGTTGT GGTCGAGGAC
CATGGGGTCG GTCTCGAAGG AACGGACGTG GAGCGGCTGT TCGACGCATT CCACACGACG
AAACCGCACG GTATGGGAAT AGGGCTGTCG GTGAGCCGCT CCATTATCGA GGCACACAAA
GGGAAAATAT GGGCGGAGCC CAGACCTTCT GGTGGCGCCA TATTCGGCTT CGCTTTGCCG
TTCGACAAGG ACTCGGTCGA CAGACCATCG CCCCCGGAAA TGAAGACATG A
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| Protein sequence | MPDMVMVASE NERLRRCMND ILSVTALPAA WTGGTVDGIC SALLDALRSI LDVDFLVVNV
AGSGDQAEVL KERSRTNFVD AGAVIISDLV RTLGANIAVW PCETNVEHGE SDLRVLIEKL
GVNGKVGVLV AGSTVSSFPT EEDRILLHVA ACQAALAITE AIRFRDDTRA VAERELNRIA
DAIPVMAWST LPDGRADFFN EHFLTFLGIS SEQAAGWGWA ASIHPDDSRA LQSVWMELLA
SGMPGETEAR LRRWDGQYRW FLFRANPVYS DEGAVVRWYG TNTDIDDRKR FEEEMRRSAA
LMAQAQRLTV TGSVWWRPAT NDIYWSDEAY RVAGQDVGIT PSVEMMLDRC HPEDLPRIQK
LISNAMNRGE NVDVEHRLLM TDGAVKYVHV VLQNIGNNPA DPEFIGAVAD ITERKLAEEQ
LRRSDVLLRE GQRISQTGTF SWKVETDEIT FSEELNRIFG FESGRVVDFD AIGQRVYEED
LPLLAIKMAD VRQGGDNPDY EIRLFVDGQI KHVRVVGRII RHLDGTMECI GAVQDVSAQR
IAELGRDKLR SELSQLARVT SLSTMAASIA HEVNQPLAGI IMNASASLRM LCANPPNITG
AVETAKRTIR DGNRASDVIL RLRNLFKRGV ATVEWLDLND AIRELIGLAA SDLQRGRILL
IEELADPPPF VLGDRVQLQQ VIMNLLRNSI DAMTDTAQTQ KKIFVRTVVG LGEVRVVVED
HGVGLEGTDV ERLFDAFHTT KPHGMGIGLS VSRSIIEAHK GKIWAEPRPS GGAIFGFALP
FDKDSVDRPS PPEMKT
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