Gene Smed_5465 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5465 
Symbol 
ID5319767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp431997 
End bp434069 
Gene Length2073 bp 
Protein Length690 aa 
Translation table11 
GC content65% 
IMG OID640777227 
ProductNADH:flavin oxidoreductase/NADH oxidase 
Protein accessionYP_001314159 
Protein GI150377564 
COG category[C] Energy production and conversion 
COG ID[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.663425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.914634 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGAAC GAACGTCACC CGCTGCTCCT ACGGACATGC CGCCCACTTC GGCGGGCAAG 
CCTGATCCGT TGCTGCGGCC GTTACAGCTT GGCCAACTCA CCCTGCGTAA CCGGATCATG
AGCACCAGCC ATGAGACCGC GCTTGACGAG GGCGGTCATC CGTTGGAAGC CTATCAGCGT
TATCATGAGG AAAAGGCCAA GGGCGGGCTT GCGCTGACGA TGTTCGGCGG CTCGGCGCGC
ATCTCCGCCG ATACGAGCTG GGGCGGCACG CAGCTTGACG TGTCGAGCGA TGCGATCATT
CCGGTGTTCC GCGCCTTCTC CGACCGCATC CACCGTCATG GTGCGGCGCT CATGTGCCAG
ATTTCCCATG TCGGCCGGCG GGCGAATGCC ACGGCCGGCG CCTGGCTTCC CGCGCTCGGA
CCCTCCCATT CCCGCGAGGA TTATAACCGC AGCTTCGCCC ATGAGATGGA CAGCCACGAT
ATCGCGCGCA TTGTGCGAGA CTTTGGCCAT GCGGCGCGAC GGGCGCGCGA GGGCGGTCTC
GACGGCATCG AGACGATGAC CGGAGGCCAC CTGATTGGGC AGTTCCTGTC GCCGATGGTC
AATCGCCGCA CCGATGAATT CGGCGGCTCG CTTGAAAACC GGATGCGCTT CCTGCGCATG
GTCTACGAGG AGATCCGCCG AGAAGTCGGC AGCGATTATC CGGTCGGCAT CCGCTACACG
ATCGATGAGG ATCACAAGGA CGGCCTGAGC TTTGCCGAGG CAGTCACCGT TGCCAACAGG
CTGGAGCGGG AAGGGCTGGT CGATTTCTTC AACTGCATCT TCGGCCGGTT CGACACCCGC
CTCAACCTGC TGGTCTATAA CATTCCCGAC ATGACGGCGG CATCCGCGCC ATGGCTGCGC
CAAGTCGGGA CGTTCAAGGC GGAAACGAGC CTGCCGGTCT TCCACGCTGC CAAGATCGCG
GATGTCGCGA CCGCGCGCTA CGCGATCGAT GCGGGGCTGG TCGACATGGT CGGCATGACG
CGTGCGCATA TGGCAGATCC GCAGATCGTC AACAAACTGC GCTCGGGCAG GCAGGACCAG
ATCCGGCCGT GCGTCGGCGC ATCGCATTGT CTCTATCGTC CGGTGCATTG CATCCACAAT
CCGGCAACGG GCCGCGAGAC CTGGTTGCCG CAGGTGATGG GGCGCTCGGC GGATGCCGGG
CGCAAGGCAG TCGTCGTGGG CGGCGGGCCA GCAGGGGTGG AGGCTGCGCG GGTGCTCGCC
GAGCGGGGCC ACTACGTCGT GCTCCTGGAA GCGGCGGACC GGCTTGGCGG GCAGCTCGTG
CTGGCTGCAA AGGCCCGTCT CCGCCGCGAC CTGATCGGCA TCGTCGACTG GCGCGTTGCC
GAGCTGGAGC GCCTCGGGGT GGATGTCCGG CTCAATGTCT ATGCGGAGGC GCTGGACGTT
CTTGCCGACG CGCCAGATCT CGTTCTCGTC GCCACCGGCG GCATTCCGGA TTTCGGGTCC
GTCGGGGGAA GCGAGCTGTG CCTCAGTGTC TTCGACGCTC TTGGCAATCC CGCGCAGGTC
GCGGATGACG TGCTGATCTA TGACGCGACC GGGCGCCATC CCGCGCCCTC GGCCGCCGCC
GAGATCGCAG CAACCGGTAG AACGGTGACT TTCGTTGCCC GCGACACTTC CATCGCGCCG
GAGATGGAGC ATCACTCGAG CATCACCTAC CGCAAGGCGC TCGCCGGGCA TGACGTGCGG
GTTCTGCTGG AACACGAACT GGTGTCGGTG AGCGCGCGGG ATGGACGGCG GGAGGTGGTG
TTGCGGCACC TGCTCACGGG CCGGGAACGG CGCGAGACCT TTGCGCAGGT CATCGTCGAG
CATGGGACGA TCCCGGTGAG CGATCTCTTC GACGAGCTGC GGGCCTTCTC GGCAAACGAT
GGCGTCACGG AGATCGAAAG CTTGATCGGT CCTGCACCAC TACGCGGCCG GCGAATCTCT
GGTTTCGAGC TGCACAGGAT CGGGGATGCT GTCAGCAGCC GGTCGGTTCA TGCTGCGATG
CTGGATGCCC TAAGGCTCGC GGTGCAATTC TGA
 
Protein sequence
MEERTSPAAP TDMPPTSAGK PDPLLRPLQL GQLTLRNRIM STSHETALDE GGHPLEAYQR 
YHEEKAKGGL ALTMFGGSAR ISADTSWGGT QLDVSSDAII PVFRAFSDRI HRHGAALMCQ
ISHVGRRANA TAGAWLPALG PSHSREDYNR SFAHEMDSHD IARIVRDFGH AARRAREGGL
DGIETMTGGH LIGQFLSPMV NRRTDEFGGS LENRMRFLRM VYEEIRREVG SDYPVGIRYT
IDEDHKDGLS FAEAVTVANR LEREGLVDFF NCIFGRFDTR LNLLVYNIPD MTAASAPWLR
QVGTFKAETS LPVFHAAKIA DVATARYAID AGLVDMVGMT RAHMADPQIV NKLRSGRQDQ
IRPCVGASHC LYRPVHCIHN PATGRETWLP QVMGRSADAG RKAVVVGGGP AGVEAARVLA
ERGHYVVLLE AADRLGGQLV LAAKARLRRD LIGIVDWRVA ELERLGVDVR LNVYAEALDV
LADAPDLVLV ATGGIPDFGS VGGSELCLSV FDALGNPAQV ADDVLIYDAT GRHPAPSAAA
EIAATGRTVT FVARDTSIAP EMEHHSSITY RKALAGHDVR VLLEHELVSV SARDGRREVV
LRHLLTGRER RETFAQVIVE HGTIPVSDLF DELRAFSAND GVTEIESLIG PAPLRGRRIS
GFELHRIGDA VSSRSVHAAM LDALRLAVQF