Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5445 |
Symbol | |
ID | 5319747 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 410479 |
End bp | 411425 |
Gene Length | 947 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640777208 |
Product | transposase |
Protein accession | YP_001314140 |
Protein GI | 150377545 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3335] Transposase and inactivated derivatives |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.242552 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGAAGG CTTTATCGAT GGATTTGCGG GTCCGGGTTC TGGCGGCGGT CGGCCAGGGC CTGTCGCACC GAGCTGCAGC GGAACGTTTT GGTGTGAGCG CTGCCAGTAT CAGCCGCTGG CGCAGTCGTG AGCGTGAACG GGGCGACGCC CGGCCCAAGG CGCTTGGCGG CGATCGTCGC TCGGGTCGGA TCGATGCACA TATGAGTGTT ATCGTCGAAG CCTTGGGCCC GGAGAAGGAC GCTACCTTGG AAGAGGTACG CCGCAGTCTG GCGGATCGGG GTCTCTTCTT CGGCTTCGGG ACGATCCAGC GTTTCTTCAA GCGGCACAAC ATCACGCGCA AAAAAAGAGT GCGCATGCCT CGGAGCAAAA CCGGCCTGAC ATCCTGAAGC GGCGGCAAGA CTGGTTCGAC GGCCAACTTG ACCTTGATCC GGAACGTCTC GTTTTTATCG ATGAGACCTG GGCTTCCACC AACATGGCGC GCCGCTACGG TCGATGCCGC ATAGGCGAAC GCTTGCGGAT CAGCGTCCCT CATGGTCACT GGAAAACGAC AACCTTCATC GGCGCTCTGA CGGTGCGCGG CTTCATCGCC CCCTTTGTCA TCGACAGGCC CATCAACCGC CTTTCGTTCG AGACTTACGT CGAGAAGGTG CTGCTGCCCG AGCTGCGCCC CGATGACGTG GTCGTTATGG ACAATCTCTC CAGCCACAAA GGGCCAAGGG TTCGCGAAAT GATCGAAAGC GTTGGTGCGA AGCTAGAGTA CCTCCCACCG TACAGCCCCG ATTTCAACCC GATCGAAAAC GCATTCTCAA AGCTCAAAGC CCTGTTGAGA AAAGCCGCCG AACGGTCCAT CGAGAGCCTC TGGACAACAA TCGGGCGACT ACTCCAACTC TTCACCCCAG ACGAATGCCG CAACTATTTC GCAGCCGCAG GCTATGATGC AGCGTGA
|
Protein sequence | MSKALSMDLR VRVLAAVGQG LSHRAAAERF GVSAASISRW RSRERERGDA RPKALGGDRR SGRIDAHMSV IVEALGPEKD ATLEEVRRSL ADRGLFFGFG TIQRFFKRHN ITRKKKSAHA SEQNRPDILK RRQDWFDGQL DLDPERLVFI DETWASTNMA RRYGRCRIGE RLRISVPHGH WKTTTFIGAL TVRGFIAPFV IDRPINRLSF ETYVEKVLLP ELRPDDVVVM DNLSSHKGPR VREMIESVGA KLEYLPPYSP DFNPIENAFS KLKALLRKAA ERSIESLWTT IGRLLQLFTP DECRNYFAAA GYDAA
|
| |