| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5442 |
|---|
| Symbol | |
|---|
| ID | 5319744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 406638 |
|---|
| End bp | 407618 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640777205 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001314137 |
|---|
| Protein GI | 150377542 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.171727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCG AGAAAGCGCT CGTCCTGCTT GAGCTTACCG AAATGGCACG CGCCAGCCAT
GAAGGCGTCA CCCTTGAACA GATCCGTGAC CGCTTTGACG TCTCGCATCG GACGGCGCAA
CGGATGACCG CTGCGTTGGA GGCGGCATTT CCGCACGCTG TTCACGTCAC GGTCGACCAC
GAGCGACGAA GCCGATGGCG GATCCGCGAC ACAACACTTG CTACTCTGGC TCTGAAAGGC
GACCGCGAGC TCGCCGCACT TGATCTCGCG ATCGCCCAGT TCACTGGCTC GGGCGATAGG
GACACCGCCT CCATCCTTGA ATCACTGCGA GACCGCCTCC TCGCCGCGTT GCCGGAACGC
ACCGCGCTGA GAACGGAGGC CGACGCAGAG GCGCTTATTG CGGCACATGG CTTGCTGGCT
CGTCCGGGTC CCGTCGCGAA GTTCGACAAT AAGACGTCCG AGGTCATCTC CGAGGCCCTG
CGCGGCCCGT TCCGCCTCAG CTTCACCTAC CGCGGAACGC AGCGGACGGT CGAGCCGTAC
GGCATCCTCG TCGGTACGAG GCGTTACCTC GTCGCCCACG ATCTCAAGCG TACCGATGGG
AACCTTCGAC GATTTCGTGT CGATTTGATC GAAGACCCGA GGGTACTGCC AGAGTCGTTT
TCGCTTCCGC CAGACTTCTC GTTGTCTCGG CACGCCATGC TTGGGTTCGG ATCGTACCAC
GCTCCAGGGG AACACCAGGA AACGGTCTGG CGCTTTTCGG CGGTTGCCGC ATCTCATGCG
CGCGAGTGGC GGTTCCATCC TGAGCAGACG ACCGCCGAGC TTCCCGACGG TCGGTTCGAG
GTACGTTTCA CAGCGTCGGG CTGGGTTGAA ATGGCGTGGC ACCTTTTGCA ATGGGGTCCT
CACGTTGAGG TTGTGAAGCC CGAAGAGCTA AAACGGCAAT TGGAAGAGGT TCGGAGGGGA
GCGGTAGAGA TCTTTCCCTG A
|
|---|
| Protein sequence | MSFEKALVLL ELTEMARASH EGVTLEQIRD RFDVSHRTAQ RMTAALEAAF PHAVHVTVDH
ERRSRWRIRD TTLATLALKG DRELAALDLA IAQFTGSGDR DTASILESLR DRLLAALPER
TALRTEADAE ALIAAHGLLA RPGPVAKFDN KTSEVISEAL RGPFRLSFTY RGTQRTVEPY
GILVGTRRYL VAHDLKRTDG NLRRFRVDLI EDPRVLPESF SLPPDFSLSR HAMLGFGSYH
APGEHQETVW RFSAVAASHA REWRFHPEQT TAELPDGRFE VRFTASGWVE MAWHLLQWGP
HVEVVKPEEL KRQLEEVRRG AVEIFP
|
|---|
| |