Gene Smed_5409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5409 
Symbol 
ID5319711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp372115 
End bp372897 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content57% 
IMG OID640777175 
Producthypothetical protein 
Protein accessionYP_001314107 
Protein GI150377512 
COG category[L] Replication, recombination and repair 
COG ID[COG4227] Antirestriction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.861263 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.17576 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAGCA TCAACGACAC TTACCAACGC ATCACTGATA CCATCGTAAA GCAGCTTGAA 
GCCGGCACAA AACCGTGGAT CCGTCCCTGG CGCAACGACA TCCGCTGCTC ACTCACCCCG
CGCCGCGCCA CCGGCGAAGC CTATCGGGGC ATCAACGTCC TGATGCTGTG GATCTCCAGC
CAGATTTTCG GCTACGAGGA AAACACCTGG ATGACCTATC GGCAGGCCCA GGATCTCGGC
GCGAAAGTCC GAAAGGGTGA GAAAGGAACG CTCGTCGTCA AGTACGGAAC CTTCACGCCG
AAGGAGCGCG AAGACGACGA GGATTGTTCA ATCCCTTATC TCAAAGGATA CACCGTCTTC
AATGTCGAGC AGATCAAGAA CCTGCCTGCC CGGTTTTTCA GCCCGGCCGA TGAGTTACCG
AGGGCTCCGG TCCCGCACAT TGAGACCGTT GAAACATTCG TCAAAAACAC CGGCGCCAGT
GTCACCTACG GCGGCACCAA AGCATGCTAC CGGCCGAACT GCGACGACAT TCTGATGCCG
GACCGGCACC GGTTCGACAG CCAGGTCCAT CTATATTCGA CCTTGCTCCA CGAAATTGGC
CATTATGCCG TAAGCCGGAT TATGCCGCAT GGCCGATTAT CAAGGCGGCG GCGCCTCCAT
TCGGCCATGC GGCGGTTCGG CATAATCAGA GCGATTCAAG GAACACAAGC AGTTCGTCGT
TGGGACGATA CCGCCCAGGA TGGGCTTCTG GTCTGGCGAC CTGAGAGAGC GCCTTTTCCT
TGA
 
Protein sequence
MQSINDTYQR ITDTIVKQLE AGTKPWIRPW RNDIRCSLTP RRATGEAYRG INVLMLWISS 
QIFGYEENTW MTYRQAQDLG AKVRKGEKGT LVVKYGTFTP KEREDDEDCS IPYLKGYTVF
NVEQIKNLPA RFFSPADELP RAPVPHIETV ETFVKNTGAS VTYGGTKACY RPNCDDILMP
DRHRFDSQVH LYSTLLHEIG HYAVSRIMPH GRLSRRRRLH SAMRRFGIIR AIQGTQAVRR
WDDTAQDGLL VWRPERAPFP