Gene Smed_5396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5396 
Symbol 
ID5319698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp360345 
End bp362264 
Gene Length1920 bp 
Protein Length639 aa 
Translation table11 
GC content60% 
IMG OID640777165 
Productconjugal transfer coupling protein TraG 
Protein accessionYP_001314097 
Protein GI150377502 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID[TIGR02767] Ti-type conjugative transfer system protien TraG 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.457132 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGCGA ATAGGATCGG CCTTGCAGTG GCTCCGGTCG TGCTTATGGC ATTTCCTGTT 
ATTGGAATGA CCGGGTTTGA GCAATGGCTG TCAGCCTTAG GCAAGACGGA TGCCGCAAGG
CTGACCCTCG GCCAGGCCGG TATCGCCGTG CCTTACGTCA GCGCCGCAGC GATCGGCGTA
ATTTTTCTAT TCGCAAGCGC CGGTTCCGCG AGCATCAGGT TCGCGGGGTG GGGCGCTCTA
ACCGGAAGCA CGGCAACGGT TCTGGTCGCG GCGATACGCG AGACGACACG TCTTGCCGCA
TTGGCCGCAG AGGTGCCTGG GGGCAAGTCC GCGGCCTCCT ACATCGATCC TGCAACGATG
ATCGGTGCGG CGGCGGTGCT GATGGCGGGT TGTTTCGCGC TTCGCGTCGC AATGATCGGC
AATGCAGCCT TCGCACCCGC CGAACCGAAA CGGGTCCGTG GAAAACGCGC GCTGCATGGG
CAGGCCGACT GGATGAGAAT GCACGAGGCG TCAAAGCTCT TTCCCGCTAC GGGCGGTGTC
ATCATTGGCG AGCGTTACCG AGTCGATAAG GACAGCACGG CAGCGCAGCC GTTTCGAGCT
GATGATCCGG AGACCTGGGG CACCGGCGGC AAGTCTCCGC TCCTGTGCTT CGATGGATCG
TTCGGATCCT CGCATGGAAT CGTGTTCGCC GGATCTGGCG GCTTCAAGAC AACGTCGGTG
ACAGTCCCAA CTGCGCTCAA ATGGGGTGGG GCGCTCGTCG TCCTCGACCC CTCGAGCGAA
GTGGCGCCGA TGGTCTGTAA GCACCGCAGA GATGCAGGTC GTTTTATCCG TATCCTCGAC
CCCAAGGTAC CGGAGACAGG CTTCAACGCA CTCGACTGGC TTGGTCGCTA CGGCGGGACG
AAAGAGGAAG ATATCTCTTC CGTCGCGTCG TGGATCATGA GTGACAGCGG CGGCATGCGC
GCCGTGCGTG ACGACTTCTT CCGTGCATCG GCTTTGCAAC TATTGACGGC GTTGATTGCC
GACGTCTGCC TGTCCGGCCA TACGGACAGG GAGAACCAGA CATTGCGGCA GGTTCGAGCC
AATCTCTCGG AGCCGGAGCC AAAACTGCGA GAGCGGCTGC AGTCAATCTA CGACAATTCG
GGCTCTGATT TCGTAAGGGA GAACGTCGCC GCATTCGTCA ATATGACGCC GGAAACCTTC
TCGGGGGTTT ATGCAAATGC CGTGAAGGAG ACCCACTGGC TGTCCTACCC AAATTATGCC
GCACTCGTTT CGGGGTCCAC CTTCACGACC GACGCAGTCG CAGCCGGCGA GACGGATGTG
TTCATCAATA TCGGCCTGAA GACGTTGGAG ACGCATTCCG GCCTTGCGCG CGTCATCATC
GGCTCGTTCC TTAACGCTCT TTACAATCGC GATGGCGCGG CACAGGGCAG GGCACTTTTC
CTCCTCGATG AGGTCGCGCG TTTAGGCTAC ATGCGCATTC TCGAAACCGC GCGTGATGCC
GGCCGCAAAT ACGGCATCAC CCTCACGATG ATTTACCAGT CGATCGGCCA AATGCGCGAG
ACCTACGGTG GCCGTGATGC GGCGAGCAAA TGGTTCGAGA GCGCGAGCTG GATCTCTTTC
GCTGCCATTA ACGATCCGGA GACTGCTGAG TACATCTCGA AGCGCTGCGG CATGACGACC
GTCGAGATTG ACCAGATCAG TCGCAGTTCC CAGTCGAACG GATCGTCGCG GACCCGTTCA
AAGCAGCTTG CTGCAAGACC ACTGATTCAG GCGCATGAGG TGCTGCGAAT GCGCGCCGAC
GAGCAGATCG TATTCACCGT CGGGAATGCG CCGCTTCGAT GCGGCCGCGC CATCTGGTTC
CGACGCGACG ACATGAAGGC ATGCGTGGGA ACGAATCGCT TTCAAGGACC CCTTGGATGA
 
Protein sequence
MIANRIGLAV APVVLMAFPV IGMTGFEQWL SALGKTDAAR LTLGQAGIAV PYVSAAAIGV 
IFLFASAGSA SIRFAGWGAL TGSTATVLVA AIRETTRLAA LAAEVPGGKS AASYIDPATM
IGAAAVLMAG CFALRVAMIG NAAFAPAEPK RVRGKRALHG QADWMRMHEA SKLFPATGGV
IIGERYRVDK DSTAAQPFRA DDPETWGTGG KSPLLCFDGS FGSSHGIVFA GSGGFKTTSV
TVPTALKWGG ALVVLDPSSE VAPMVCKHRR DAGRFIRILD PKVPETGFNA LDWLGRYGGT
KEEDISSVAS WIMSDSGGMR AVRDDFFRAS ALQLLTALIA DVCLSGHTDR ENQTLRQVRA
NLSEPEPKLR ERLQSIYDNS GSDFVRENVA AFVNMTPETF SGVYANAVKE THWLSYPNYA
ALVSGSTFTT DAVAAGETDV FINIGLKTLE THSGLARVII GSFLNALYNR DGAAQGRALF
LLDEVARLGY MRILETARDA GRKYGITLTM IYQSIGQMRE TYGGRDAASK WFESASWISF
AAINDPETAE YISKRCGMTT VEIDQISRSS QSNGSSRTRS KQLAARPLIQ AHEVLRMRAD
EQIVFTVGNA PLRCGRAIWF RRDDMKACVG TNRFQGPLG