Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5396 |
Symbol | |
ID | 5319698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 360345 |
End bp | 362264 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640777165 |
Product | conjugal transfer coupling protein TraG |
Protein accession | YP_001314097 |
Protein GI | 150377502 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | [TIGR02767] Ti-type conjugative transfer system protien TraG |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.457132 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGCGA ATAGGATCGG CCTTGCAGTG GCTCCGGTCG TGCTTATGGC ATTTCCTGTT ATTGGAATGA CCGGGTTTGA GCAATGGCTG TCAGCCTTAG GCAAGACGGA TGCCGCAAGG CTGACCCTCG GCCAGGCCGG TATCGCCGTG CCTTACGTCA GCGCCGCAGC GATCGGCGTA ATTTTTCTAT TCGCAAGCGC CGGTTCCGCG AGCATCAGGT TCGCGGGGTG GGGCGCTCTA ACCGGAAGCA CGGCAACGGT TCTGGTCGCG GCGATACGCG AGACGACACG TCTTGCCGCA TTGGCCGCAG AGGTGCCTGG GGGCAAGTCC GCGGCCTCCT ACATCGATCC TGCAACGATG ATCGGTGCGG CGGCGGTGCT GATGGCGGGT TGTTTCGCGC TTCGCGTCGC AATGATCGGC AATGCAGCCT TCGCACCCGC CGAACCGAAA CGGGTCCGTG GAAAACGCGC GCTGCATGGG CAGGCCGACT GGATGAGAAT GCACGAGGCG TCAAAGCTCT TTCCCGCTAC GGGCGGTGTC ATCATTGGCG AGCGTTACCG AGTCGATAAG GACAGCACGG CAGCGCAGCC GTTTCGAGCT GATGATCCGG AGACCTGGGG CACCGGCGGC AAGTCTCCGC TCCTGTGCTT CGATGGATCG TTCGGATCCT CGCATGGAAT CGTGTTCGCC GGATCTGGCG GCTTCAAGAC AACGTCGGTG ACAGTCCCAA CTGCGCTCAA ATGGGGTGGG GCGCTCGTCG TCCTCGACCC CTCGAGCGAA GTGGCGCCGA TGGTCTGTAA GCACCGCAGA GATGCAGGTC GTTTTATCCG TATCCTCGAC CCCAAGGTAC CGGAGACAGG CTTCAACGCA CTCGACTGGC TTGGTCGCTA CGGCGGGACG AAAGAGGAAG ATATCTCTTC CGTCGCGTCG TGGATCATGA GTGACAGCGG CGGCATGCGC GCCGTGCGTG ACGACTTCTT CCGTGCATCG GCTTTGCAAC TATTGACGGC GTTGATTGCC GACGTCTGCC TGTCCGGCCA TACGGACAGG GAGAACCAGA CATTGCGGCA GGTTCGAGCC AATCTCTCGG AGCCGGAGCC AAAACTGCGA GAGCGGCTGC AGTCAATCTA CGACAATTCG GGCTCTGATT TCGTAAGGGA GAACGTCGCC GCATTCGTCA ATATGACGCC GGAAACCTTC TCGGGGGTTT ATGCAAATGC CGTGAAGGAG ACCCACTGGC TGTCCTACCC AAATTATGCC GCACTCGTTT CGGGGTCCAC CTTCACGACC GACGCAGTCG CAGCCGGCGA GACGGATGTG TTCATCAATA TCGGCCTGAA GACGTTGGAG ACGCATTCCG GCCTTGCGCG CGTCATCATC GGCTCGTTCC TTAACGCTCT TTACAATCGC GATGGCGCGG CACAGGGCAG GGCACTTTTC CTCCTCGATG AGGTCGCGCG TTTAGGCTAC ATGCGCATTC TCGAAACCGC GCGTGATGCC GGCCGCAAAT ACGGCATCAC CCTCACGATG ATTTACCAGT CGATCGGCCA AATGCGCGAG ACCTACGGTG GCCGTGATGC GGCGAGCAAA TGGTTCGAGA GCGCGAGCTG GATCTCTTTC GCTGCCATTA ACGATCCGGA GACTGCTGAG TACATCTCGA AGCGCTGCGG CATGACGACC GTCGAGATTG ACCAGATCAG TCGCAGTTCC CAGTCGAACG GATCGTCGCG GACCCGTTCA AAGCAGCTTG CTGCAAGACC ACTGATTCAG GCGCATGAGG TGCTGCGAAT GCGCGCCGAC GAGCAGATCG TATTCACCGT CGGGAATGCG CCGCTTCGAT GCGGCCGCGC CATCTGGTTC CGACGCGACG ACATGAAGGC ATGCGTGGGA ACGAATCGCT TTCAAGGACC CCTTGGATGA
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Protein sequence | MIANRIGLAV APVVLMAFPV IGMTGFEQWL SALGKTDAAR LTLGQAGIAV PYVSAAAIGV IFLFASAGSA SIRFAGWGAL TGSTATVLVA AIRETTRLAA LAAEVPGGKS AASYIDPATM IGAAAVLMAG CFALRVAMIG NAAFAPAEPK RVRGKRALHG QADWMRMHEA SKLFPATGGV IIGERYRVDK DSTAAQPFRA DDPETWGTGG KSPLLCFDGS FGSSHGIVFA GSGGFKTTSV TVPTALKWGG ALVVLDPSSE VAPMVCKHRR DAGRFIRILD PKVPETGFNA LDWLGRYGGT KEEDISSVAS WIMSDSGGMR AVRDDFFRAS ALQLLTALIA DVCLSGHTDR ENQTLRQVRA NLSEPEPKLR ERLQSIYDNS GSDFVRENVA AFVNMTPETF SGVYANAVKE THWLSYPNYA ALVSGSTFTT DAVAAGETDV FINIGLKTLE THSGLARVII GSFLNALYNR DGAAQGRALF LLDEVARLGY MRILETARDA GRKYGITLTM IYQSIGQMRE TYGGRDAASK WFESASWISF AAINDPETAE YISKRCGMTT VEIDQISRSS QSNGSSRTRS KQLAARPLIQ AHEVLRMRAD EQIVFTVGNA PLRCGRAIWF RRDDMKACVG TNRFQGPLG
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