Gene Smed_5393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5393 
Symbol 
ID5319695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp356279 
End bp359587 
Gene Length3309 bp 
Protein Length1102 aa 
Translation table11 
GC content62% 
IMG OID640777162 
ProductDtr system oriT relaxase 
Protein accessionYP_001314094 
Protein GI150377499 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR02768] Ti-type conjugative transfer relaxase TraA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.763258 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.706362 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCGTTC CTCACTTCTC CGTCAGCCTC ATCACCCGTG GCTCCGGCCG CAGCGCAGTG 
CTGTCTGCGG CATATCGGCA TTGCGCGAAG ATGGCGTACC AACGGGAAGC CCGAACGATT
GACTACACCC GCAAGACTGG ACTTCTTCAC GAGGAGTTCG TCATCCCGGA CAACGCACCG
GAATGGTTGC AGTCGATGAT CACCGATCGC TCGGTCTCCG ACGCAGCGGA AGCATTCTGG
AACAAGGTCG AGGATTTCGA GAAGCGCTCC GACGCCCAGC TTGCCAAGGA GGTCACAATC
GCGCTGCCGA TCGAGCTGAC GTCTGCACAA AACATTGCTC TCGTCCGTGA CTTCGTGGAG
CAGCACATCA GCGCCAAGGG AATGGTGGCG GACTGGGTTT ATCACGACGC GCCGGGCAAT
CCGCATGTCC ACTTGATGAC GACGCTGCGG CCCCTGACGC AACAGGGTTT CGGCGCCAAG
AAGGTCGCCG TCCTTGGGCC GGACGGCTAT CCCATCCGCA ATGACGCCGG CAAGATTGTG
TACGAGCTTT GGGCCGGAAG TCTCGACGAC TTCAACGCCT TGCGCGACGG GTGGTTCGCC
TGCCAAAACC GCCATCTGAC GCTTGCCGGC CTCGACATTC GCATCGATGG CCGTTCTTTC
GAGAAGCAGG GTATCGAGCT CGCTCCGACC CTCCACCTCG GCGCCGGCAC GAAGGCGATC
GAGCGGAAAG CGACGGCAGA GGCGAAGACG CTTTCGCTCG AGCGCCTGCA GCTACAGGAG
GAACTTCGGA ACGAGAATGC CCGGCGCATT CAGCGTCGAC CGGAGATCGT GCTCGACCTG
ATCACGCGAG AAAGGAGCGT GTTCGATGAA CGCGACGTGG CAAAGATCCT GCATCGCTAT
GTTGACGATC CCGCGGTTTT CCGGAGCCTG ATGGCGCGCA TCCTGCAGAG CCCCGAGACA
CTCCAACTCG AACGCGAACG AACCGCTTTT GCCACCGGCA TCCGGGCTCC GGCAAAATAC
ACGACGCGCG CGCTGATCCG GCTCGAAGCG GAGATGGCAA ACCGTGCGAT CTGGCTCTCA
AGGCAATCCT CGCATCGGCT TCGGGAAGCG GTGCTGGAGG CGACGTTGGC GCGCCATTCG
CGCCTGTCGG ACGAACAGAA AACGGCAATC GAGCATGTTG CGAAAGCCGG TCGGATCGCT
GCTGTAATCG GTCGCGCCGG TGCGGGCAAG ACGACCATGA TGAAAGCGGC GCGGGAGGCG
TGGGAAGCGG CCGGCTACCG GGTGGTCGGC GGCGCGCTTG CAGGCAAGGC GGCGGAGGGT
CTGGAGAAGG AAGCGGGCAT CATCTCCCGC ACGCTGTCGG CGTGGGAGCT GCGTTGGAGC
CAAGGTCGCA ACCAGCTTGA CGCCGGGACG GTCTTCATTC TCGACGAGGC GGGCATGGTC
TCGTCCAGAC AGATGGCATG CTTCATTGAG GCCGCGACGA GGACGGGGGC AAAACTCGTC
CTTGTTGGCG ATCCGGAACA GCTTCAGCCG ATTGAAGCGG GCGCGGCGTT CCGCGCAATC
GCCGATCGCA TCGGCTATGC CGAGCTCGAA ACCATCTATC GTCAGCGTGA ACAGTGGATG
CGCGATGCGT CCCTCGATCT CGCCCGGGGC AATGTCGGCA AGGCTGTTGA GGCTTACCGT
GCCAACGGCA GGATGATCGG AGCCGAGCTA AAGGCTGAAG CTGTGCGGAA CCTTGTCGCT
GACTGGAACC GGGACTACGA TCCGACGAAG ACCACTTTGA TCCTCGCTCA TCTTCGCCGC
GACGTACGTA TGCTCAATGA GATGGCCCGG TCCAAACTCG TCGAGCGTGG CATCGTTGGC
GAAGGCTTTG CTTTCCGAAC CGCGGATGGA AACCGCAACT TTGCGGCCGG TGACCAGATC
GTTTTCCTTA AGAACGAAGG CTCGCTCGGC GTCAAAAACG GCATGCTCGG AAAGATCGTC
GAAGCTTCGC CGAACCGCGT TGTCGCGGAA ATCGGTGCGG GCGAGCACCA CCGCCAGGTG
ATCATCGAAC AGCGCTTCTA CAACAATCTT GACCACGGCT ATGCCACCAC AATTCACAAG
AGCCAGGGCG CAACGGTGGA CCGGGTGAAG GTGCTCGCGT CGCTTTCCCT CGACAGGCAT
CTGGTCTATG TCGCCATGAC CCGTCACCGC GACAATCTCG ACGTCTATTA CGGCGCCCGA
TCCTTTGCCA GGGCCGGCGG ACTGATCCAG GTTCTGTCAC GGAAGAATTC GAAGGAAACC
ACGCTCGATT ACGAGAAGGC CACCTTTTAT CGGCAGGCGC TACGCTTCGC CGAAGCCCGC
GGCCTGCACC TCCTCAATGT CGCCCGTACG ATCACTCGCG ACCGGCTCGC CTGGACGGCC
CGGCAGAGCT CCAGGCTTGC CGGTCTGGCT CACCGTCTCG TTCGGATCGG CCGCAAGCTC
GGACTCGCCG CCGGCACCAA TCCAATCAAC TCGCAAAACA GCAAGGAGAC CAGGCCCATG
GTTGCCGGTA TCACGACCTA TCCGGAATCG GTGGAGCAAG CAGTCGCCGA CAAGCTCGCA
GCAGATCCCG GCTTGAAGAA GCAGTGGGAC GATGTGTCGA CCCGCTTCCA TCTGGTCTAT
GCGCATCCGG CAGCCGCGTT CAAGGCGGTG AACATCGACG TCATGCTGAA GGACGAGACC
GTCGCCAAAG CGACGCTCTC TAAAATCGCC AAGCAGCCGG ACAGCTACGG TGCACTTAAA
GGCAAGACTG GTTTGCTCGC AAGCCGCGCC GACAGGCAGG ACCGCCAGAG GGCGGAACGC
AACGTTCCGG CTCTGGTCCA GAGCCTCGAT GGTTACATGC GTCAGCGCGG CAGCGCCGAA
CGACGCTACC GGGCCGAGGA ATTGGAAGCC CGCCGCAAGG TAGCGATCGA CATCCCGGCG
CTATCTCCAG GCGCCCGGCA AATACTGGAG CGCGTGCGTG ATGCCATTGA CCGCAACGAT
CTTTCCGCTG CGCTCGAGTT CGCACGCGCC GACCGGCATG TGAAAGCTGA ACTCGACGGA
TTCGCAAATG CGGTCGACGC GCGCTTCGGC AAACGCACCT TCCTTCCACT GAGCGCCAGC
GACACAAACG GAGACACCTT CACATCGGTC ACGGCCGGCA TGAATCCGGG CCAGAGGCTG
GAAGTCGAAT CGGCATGGAA AGCAATGCGC ACGGTGCAGC AACTCAGTGC CCATGAGCGC
ACGACCGAGG CCTTGAAGCA TTCAGAGACA TTGCGCCTGA GCAAGGGCCA GGGGCTCTCG
CTGAGATGA
 
Protein sequence
MAVPHFSVSL ITRGSGRSAV LSAAYRHCAK MAYQREARTI DYTRKTGLLH EEFVIPDNAP 
EWLQSMITDR SVSDAAEAFW NKVEDFEKRS DAQLAKEVTI ALPIELTSAQ NIALVRDFVE
QHISAKGMVA DWVYHDAPGN PHVHLMTTLR PLTQQGFGAK KVAVLGPDGY PIRNDAGKIV
YELWAGSLDD FNALRDGWFA CQNRHLTLAG LDIRIDGRSF EKQGIELAPT LHLGAGTKAI
ERKATAEAKT LSLERLQLQE ELRNENARRI QRRPEIVLDL ITRERSVFDE RDVAKILHRY
VDDPAVFRSL MARILQSPET LQLERERTAF ATGIRAPAKY TTRALIRLEA EMANRAIWLS
RQSSHRLREA VLEATLARHS RLSDEQKTAI EHVAKAGRIA AVIGRAGAGK TTMMKAAREA
WEAAGYRVVG GALAGKAAEG LEKEAGIISR TLSAWELRWS QGRNQLDAGT VFILDEAGMV
SSRQMACFIE AATRTGAKLV LVGDPEQLQP IEAGAAFRAI ADRIGYAELE TIYRQREQWM
RDASLDLARG NVGKAVEAYR ANGRMIGAEL KAEAVRNLVA DWNRDYDPTK TTLILAHLRR
DVRMLNEMAR SKLVERGIVG EGFAFRTADG NRNFAAGDQI VFLKNEGSLG VKNGMLGKIV
EASPNRVVAE IGAGEHHRQV IIEQRFYNNL DHGYATTIHK SQGATVDRVK VLASLSLDRH
LVYVAMTRHR DNLDVYYGAR SFARAGGLIQ VLSRKNSKET TLDYEKATFY RQALRFAEAR
GLHLLNVART ITRDRLAWTA RQSSRLAGLA HRLVRIGRKL GLAAGTNPIN SQNSKETRPM
VAGITTYPES VEQAVADKLA ADPGLKKQWD DVSTRFHLVY AHPAAAFKAV NIDVMLKDET
VAKATLSKIA KQPDSYGALK GKTGLLASRA DRQDRQRAER NVPALVQSLD GYMRQRGSAE
RRYRAEELEA RRKVAIDIPA LSPGARQILE RVRDAIDRND LSAALEFARA DRHVKAELDG
FANAVDARFG KRTFLPLSAS DTNGDTFTSV TAGMNPGQRL EVESAWKAMR TVQQLSAHER
TTEALKHSET LRLSKGQGLS LR