Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5393 |
Symbol | |
ID | 5319695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 356279 |
End bp | 359587 |
Gene Length | 3309 bp |
Protein Length | 1102 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640777162 |
Product | Dtr system oriT relaxase |
Protein accession | YP_001314094 |
Protein GI | 150377499 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.763258 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.706362 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCCGTTC CTCACTTCTC CGTCAGCCTC ATCACCCGTG GCTCCGGCCG CAGCGCAGTG CTGTCTGCGG CATATCGGCA TTGCGCGAAG ATGGCGTACC AACGGGAAGC CCGAACGATT GACTACACCC GCAAGACTGG ACTTCTTCAC GAGGAGTTCG TCATCCCGGA CAACGCACCG GAATGGTTGC AGTCGATGAT CACCGATCGC TCGGTCTCCG ACGCAGCGGA AGCATTCTGG AACAAGGTCG AGGATTTCGA GAAGCGCTCC GACGCCCAGC TTGCCAAGGA GGTCACAATC GCGCTGCCGA TCGAGCTGAC GTCTGCACAA AACATTGCTC TCGTCCGTGA CTTCGTGGAG CAGCACATCA GCGCCAAGGG AATGGTGGCG GACTGGGTTT ATCACGACGC GCCGGGCAAT CCGCATGTCC ACTTGATGAC GACGCTGCGG CCCCTGACGC AACAGGGTTT CGGCGCCAAG AAGGTCGCCG TCCTTGGGCC GGACGGCTAT CCCATCCGCA ATGACGCCGG CAAGATTGTG TACGAGCTTT GGGCCGGAAG TCTCGACGAC TTCAACGCCT TGCGCGACGG GTGGTTCGCC TGCCAAAACC GCCATCTGAC GCTTGCCGGC CTCGACATTC GCATCGATGG CCGTTCTTTC GAGAAGCAGG GTATCGAGCT CGCTCCGACC CTCCACCTCG GCGCCGGCAC GAAGGCGATC GAGCGGAAAG CGACGGCAGA GGCGAAGACG CTTTCGCTCG AGCGCCTGCA GCTACAGGAG GAACTTCGGA ACGAGAATGC CCGGCGCATT CAGCGTCGAC CGGAGATCGT GCTCGACCTG ATCACGCGAG AAAGGAGCGT GTTCGATGAA CGCGACGTGG CAAAGATCCT GCATCGCTAT GTTGACGATC CCGCGGTTTT CCGGAGCCTG ATGGCGCGCA TCCTGCAGAG CCCCGAGACA CTCCAACTCG AACGCGAACG AACCGCTTTT GCCACCGGCA TCCGGGCTCC GGCAAAATAC ACGACGCGCG CGCTGATCCG GCTCGAAGCG GAGATGGCAA ACCGTGCGAT CTGGCTCTCA AGGCAATCCT CGCATCGGCT TCGGGAAGCG GTGCTGGAGG CGACGTTGGC GCGCCATTCG CGCCTGTCGG ACGAACAGAA AACGGCAATC GAGCATGTTG CGAAAGCCGG TCGGATCGCT GCTGTAATCG GTCGCGCCGG TGCGGGCAAG ACGACCATGA TGAAAGCGGC GCGGGAGGCG TGGGAAGCGG CCGGCTACCG GGTGGTCGGC GGCGCGCTTG CAGGCAAGGC GGCGGAGGGT CTGGAGAAGG AAGCGGGCAT CATCTCCCGC ACGCTGTCGG CGTGGGAGCT GCGTTGGAGC CAAGGTCGCA ACCAGCTTGA CGCCGGGACG GTCTTCATTC TCGACGAGGC GGGCATGGTC TCGTCCAGAC AGATGGCATG CTTCATTGAG GCCGCGACGA GGACGGGGGC AAAACTCGTC CTTGTTGGCG ATCCGGAACA GCTTCAGCCG ATTGAAGCGG GCGCGGCGTT CCGCGCAATC GCCGATCGCA TCGGCTATGC CGAGCTCGAA ACCATCTATC GTCAGCGTGA ACAGTGGATG CGCGATGCGT CCCTCGATCT CGCCCGGGGC AATGTCGGCA AGGCTGTTGA GGCTTACCGT GCCAACGGCA GGATGATCGG AGCCGAGCTA AAGGCTGAAG CTGTGCGGAA CCTTGTCGCT GACTGGAACC GGGACTACGA TCCGACGAAG ACCACTTTGA TCCTCGCTCA TCTTCGCCGC GACGTACGTA TGCTCAATGA GATGGCCCGG TCCAAACTCG TCGAGCGTGG CATCGTTGGC GAAGGCTTTG CTTTCCGAAC CGCGGATGGA AACCGCAACT TTGCGGCCGG TGACCAGATC GTTTTCCTTA AGAACGAAGG CTCGCTCGGC GTCAAAAACG GCATGCTCGG AAAGATCGTC GAAGCTTCGC CGAACCGCGT TGTCGCGGAA ATCGGTGCGG GCGAGCACCA CCGCCAGGTG ATCATCGAAC AGCGCTTCTA CAACAATCTT GACCACGGCT ATGCCACCAC AATTCACAAG AGCCAGGGCG CAACGGTGGA CCGGGTGAAG GTGCTCGCGT CGCTTTCCCT CGACAGGCAT CTGGTCTATG TCGCCATGAC CCGTCACCGC GACAATCTCG ACGTCTATTA CGGCGCCCGA TCCTTTGCCA GGGCCGGCGG ACTGATCCAG GTTCTGTCAC GGAAGAATTC GAAGGAAACC ACGCTCGATT ACGAGAAGGC CACCTTTTAT CGGCAGGCGC TACGCTTCGC CGAAGCCCGC GGCCTGCACC TCCTCAATGT CGCCCGTACG ATCACTCGCG ACCGGCTCGC CTGGACGGCC CGGCAGAGCT CCAGGCTTGC CGGTCTGGCT CACCGTCTCG TTCGGATCGG CCGCAAGCTC GGACTCGCCG CCGGCACCAA TCCAATCAAC TCGCAAAACA GCAAGGAGAC CAGGCCCATG GTTGCCGGTA TCACGACCTA TCCGGAATCG GTGGAGCAAG CAGTCGCCGA CAAGCTCGCA GCAGATCCCG GCTTGAAGAA GCAGTGGGAC GATGTGTCGA CCCGCTTCCA TCTGGTCTAT GCGCATCCGG CAGCCGCGTT CAAGGCGGTG AACATCGACG TCATGCTGAA GGACGAGACC GTCGCCAAAG CGACGCTCTC TAAAATCGCC AAGCAGCCGG ACAGCTACGG TGCACTTAAA GGCAAGACTG GTTTGCTCGC AAGCCGCGCC GACAGGCAGG ACCGCCAGAG GGCGGAACGC AACGTTCCGG CTCTGGTCCA GAGCCTCGAT GGTTACATGC GTCAGCGCGG CAGCGCCGAA CGACGCTACC GGGCCGAGGA ATTGGAAGCC CGCCGCAAGG TAGCGATCGA CATCCCGGCG CTATCTCCAG GCGCCCGGCA AATACTGGAG CGCGTGCGTG ATGCCATTGA CCGCAACGAT CTTTCCGCTG CGCTCGAGTT CGCACGCGCC GACCGGCATG TGAAAGCTGA ACTCGACGGA TTCGCAAATG CGGTCGACGC GCGCTTCGGC AAACGCACCT TCCTTCCACT GAGCGCCAGC GACACAAACG GAGACACCTT CACATCGGTC ACGGCCGGCA TGAATCCGGG CCAGAGGCTG GAAGTCGAAT CGGCATGGAA AGCAATGCGC ACGGTGCAGC AACTCAGTGC CCATGAGCGC ACGACCGAGG CCTTGAAGCA TTCAGAGACA TTGCGCCTGA GCAAGGGCCA GGGGCTCTCG CTGAGATGA
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Protein sequence | MAVPHFSVSL ITRGSGRSAV LSAAYRHCAK MAYQREARTI DYTRKTGLLH EEFVIPDNAP EWLQSMITDR SVSDAAEAFW NKVEDFEKRS DAQLAKEVTI ALPIELTSAQ NIALVRDFVE QHISAKGMVA DWVYHDAPGN PHVHLMTTLR PLTQQGFGAK KVAVLGPDGY PIRNDAGKIV YELWAGSLDD FNALRDGWFA CQNRHLTLAG LDIRIDGRSF EKQGIELAPT LHLGAGTKAI ERKATAEAKT LSLERLQLQE ELRNENARRI QRRPEIVLDL ITRERSVFDE RDVAKILHRY VDDPAVFRSL MARILQSPET LQLERERTAF ATGIRAPAKY TTRALIRLEA EMANRAIWLS RQSSHRLREA VLEATLARHS RLSDEQKTAI EHVAKAGRIA AVIGRAGAGK TTMMKAAREA WEAAGYRVVG GALAGKAAEG LEKEAGIISR TLSAWELRWS QGRNQLDAGT VFILDEAGMV SSRQMACFIE AATRTGAKLV LVGDPEQLQP IEAGAAFRAI ADRIGYAELE TIYRQREQWM RDASLDLARG NVGKAVEAYR ANGRMIGAEL KAEAVRNLVA DWNRDYDPTK TTLILAHLRR DVRMLNEMAR SKLVERGIVG EGFAFRTADG NRNFAAGDQI VFLKNEGSLG VKNGMLGKIV EASPNRVVAE IGAGEHHRQV IIEQRFYNNL DHGYATTIHK SQGATVDRVK VLASLSLDRH LVYVAMTRHR DNLDVYYGAR SFARAGGLIQ VLSRKNSKET TLDYEKATFY RQALRFAEAR GLHLLNVART ITRDRLAWTA RQSSRLAGLA HRLVRIGRKL GLAAGTNPIN SQNSKETRPM VAGITTYPES VEQAVADKLA ADPGLKKQWD DVSTRFHLVY AHPAAAFKAV NIDVMLKDET VAKATLSKIA KQPDSYGALK GKTGLLASRA DRQDRQRAER NVPALVQSLD GYMRQRGSAE RRYRAEELEA RRKVAIDIPA LSPGARQILE RVRDAIDRND LSAALEFARA DRHVKAELDG FANAVDARFG KRTFLPLSAS DTNGDTFTSV TAGMNPGQRL EVESAWKAMR TVQQLSAHER TTEALKHSET LRLSKGQGLS LR
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