| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5392 |
|---|
| Symbol | |
|---|
| ID | 5319694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 355716 |
|---|
| End bp | 356282 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640777161 |
|---|
| Product | conjugal transfer pilin processing protease TraF |
|---|
| Protein accession | YP_001314093 |
|---|
| Protein GI | 150377498 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.261022 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.138256 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTC CACTCCTTCA AACAGCGCCG ACGAGACGAC GCCGTACGCC ATTCCTCCTT
GGCTTGGCGA TGGCCCCTTT ACTTTTTCTT GGTGCAATCT CGGTCGCCTC GTTCGGTGGC
TATCGCATCA ATCTCACGCC GAGCGAGCCG CTCGGTCTCT GGCGCTTTGT CAAACTGGAT
CGGCCAGCCG CCGTTGGCGA TCTCGTCTTG GTTTGCCCGC CTCAAACCGC GGCCATGCAA
GAGGCGCGAA GGCGCGGTTA CCTTCGCGCC GGGTTGTGTC CTGGCGACGT CGCGCCGCTC
ATCAAGACAG TCATCGCCGT TGCGGGACAA CGGGTCGACG TCTGCGTCGG CGTCTCGGTG
AACGGCCATC CGATTCCCTC CTCCGGTCTA GCGCAACGAG ACGGACAGGG GCGACCTATG
ACCGAGTTCC CCGGCGGAAT TGTGCCGGCA AACTACGTCT TCCTGCACTC GCGGTTCGCC
AGCTCCTATG ACTCTCGCTA CTTCGGCCCC GTCCCGGCTT CCGGCATCCT CGGCCTGGCG
CAAGAAGTCC TGACCTATGC GCCGTAA
|
|---|
| Protein sequence | MSIPLLQTAP TRRRRTPFLL GLAMAPLLFL GAISVASFGG YRINLTPSEP LGLWRFVKLD
RPAAVGDLVL VCPPQTAAMQ EARRRGYLRA GLCPGDVAPL IKTVIAVAGQ RVDVCVGVSV
NGHPIPSSGL AQRDGQGRPM TEFPGGIVPA NYVFLHSRFA SSYDSRYFGP VPASGILGLA
QEVLTYAP
|
|---|
| |