| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5383 |
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| Symbol | |
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| ID | 5319685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 348813 |
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| End bp | 349475 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640777153 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_001314085 |
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| Protein GI | 150377490 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0583323 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAGTAA ACCGCACGCC TGAAAATCCC TATCTTGCCG CTCGCCAGGA ATGGACCGAG
CGATATGGCT CCTATGTGAA GGCCGCAGCC GCATGGCGCG TTGTCGGCAT ACTCAGTCTT
GCCTTGGCCC TCGTAGGTTT CAGCTACGCT TTGTACCTCA GCACCCAGGT CAGGCTGGTG
CCCTATATCG TGGAAGTCGA TAGGCTTGGA ACTTCGGTTG CGTCTGGCTT CCCCGAGCAG
ATCGAATATG CCGACGCCCG CGTAGTACGC GCCACTCTAG GCAACTTCGT CACGAGCTTT
CGCAGCGTCA CCCCGGATGC CGTGGTGCAG AAGCAATACA TCGACCGCAC CTATGCGCTT
CTACGCACCT CCGATCCGTC CACTCAAAAA ATCAACGATT GGTTCCGAAG CAACTCCCCG
TTCGAGAAGG CCAGATCTTC AACAGTTGCC ATCGAGGTCA ACAATATTGT GGCCCTCTCG
AACCAGACCT ATCAGATCGA CTGGACGGAA TACGAGCGGG ACCGGAAGGG CAAGGAAACC
GGGACGCGCC GCTTTCGGGG CATTGCAACG GTCGCGCTTA CCGCACCGCA GGATGAGGCG
ACGATCCGTC TTAATCCGAT CGGCCTCTAT GTCACAGATT TCGACTGGAC GGCGCAGCTA
TAA
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| Protein sequence | MAVNRTPENP YLAARQEWTE RYGSYVKAAA AWRVVGILSL ALALVGFSYA LYLSTQVRLV
PYIVEVDRLG TSVASGFPEQ IEYADARVVR ATLGNFVTSF RSVTPDAVVQ KQYIDRTYAL
LRTSDPSTQK INDWFRSNSP FEKARSSTVA IEVNNIVALS NQTYQIDWTE YERDRKGKET
GTRRFRGIAT VALTAPQDEA TIRLNPIGLY VTDFDWTAQL
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