| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5379 |
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| Symbol | |
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| ID | 5319681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 344208 |
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| End bp | 346661 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640777149 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_001314081 |
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| Protein GI | 150377486 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.325542 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGCCC TCAAACGTTT CCGTGCGACC GGTCCGTCCT TCGCCGATCT GGTCCCTTAT
GCCGGCCTGG TCGATAATGG CGTTCTCCTC CTGAAGGACG GAAGCCTGAT GGCCGGCTGG
TACTTTGCTG GACCGGACTG CGAAAGCGCC ACTGACCTCG AACGCAATGA ACTATCGAGG
CAGATCAATT CGGTCCTGTC GCGCCTTGGA AGTGGGTGGA TGATTCAGGT CGAGGCGATC
CGCATTCCGA CAGTCGACTA TCCATCTGAC GACCACTGCC ATTTCCCTGA CCCGGTAACG
CGTGCGATCG ATGCCGAGCG CCGCGCGCAC TTCGCACACA CGCAGGGGCA CTTCGAGAGC
AAGCACGCGC TAATACTGAC CTATAGACCG CTTGAGTCGA GGAAGGCTGC TCTTAGCAAA
TACATCTACT CGGATGAGGA GAGCCGCAAG AAGTCCTACG CGGACACGGT ACTATTTGTC
TTCAAGAACG CCGTCCGCGA GATCGAGCAG TATTTCGCGA ACACGCTTTC GATCAAGCGA
ATGGAAACGC GCGAAACGGT TAAGAGGGGC GGGGAGCGGG TTGCCCGGTA TGACGAGTTG
CTCCAGTTCG TGCGGTTCTG CATAACAGGC GAGAGTCACC CCGTCCGCTT GCCGGATATT
CCGATGTATC TAGACTGGCT TGCGACCGCC GAGCTTGAAC ACGGGCTGAC GCCGAAGGTT
GAGAACCGCT TCCTTGGCGT CGTTGCTATA GACGGCCTGC CGGCGGAAAG CTGGCCAGGG
ATCCTGAACA GTCTTGACCT GATGCCGCTC ACCTACCGAT GGTCATCGCG CTTCATCTTT
CTCGATGCCG AAGAAGCCCG GGCGAAGCTC GAACGCACAC GCAAGAAATG GCAGCAGAAG
GTGCGGCCGT TTTTCGACCA GCTGTTTCAG ACGCAAAGCC GCTCGGTGGA TCAGGACGCC
ATGCTGATGG TGGCCGAGAC TGAGGATGCC ATCGCCCAAG CCTCGTCGCA GCTGGTCGCC
TATGGCTACT ACACGCCTGT GGTCGTGCTG TTCGATGACG ATCGGAACAC GCTGCAGGAG
AAGGCCGAAT CTGTGCGCCG ACTGGTTCAG GCCGAAGGAT TTGGTGCGAG AATTGAGACA
CTCAACGCGA CCGACGCTTA TCTCGGCAGC CTGCCGGGCA ACTGGTACTG CAACATCCGT
GAACCGCTGA TCAACACCAG TAACTTAGCT GATCTCATTC CTCTCAATTC GGTCTGGTCC
GGCAACGCCG TTGCACCATG CCCCTACTAT CCGCCGAACT CGCCCCCACT GATGCAGGTC
GCCAGCGGTT CCACGCCATT TCGGCTGAAC CTGCACGTCG ATGATGTCGG CCATACGCTG
GTCTTCGGCC CGACGGGGTC AGGCAAATCT ACGCTGCTGG CGCTGATAGC GGCGCAGTTT
CGCCGTTATG ACCGCGCCCA GATCTTTGCT TTTGACAAAG GGAATTCGCT GCTTTCTCTA
ACGCTTGCAG CGGGTGGCTA TCACTATGAT CTCTGCGGCG ACGATGCGGA AGAGAGGAAC
GCTCTGGCCT TCTGCCCTCT ATCCGAACTG AAAAGTGACG CTGATCGGGC GTGGGCGACG
GAATGGATCG AGATGCTGAT CGCCCTGCAG GGCGTCATCA TCACCCCCGA CCATCGCAAT
GCCATTTCCC ATCAAGTCTC ACTTATGGCC AGCGCGACGG GGCGCTCGCT GTCGGATTTC
GTTAGCGGCG TTCAGATGCG CGAGATTAAG GACGCACTTC ATCACTACAC CGTCGACGGT
CCGATGGGCC AGTTACTTGA TGCTGAAGAG GATGGGCTGA CGCTTGGCGC CTTGCAAACT
TTCGAAATCG AGCAGCTCAT GAACATGGGT GAGCGCAACC TGGTGCCTGT GCTCACCTAT
ATCTTCCGCC GGATCGAGAA ACGCCTCGAT GGCTCGCCAA GCCTGATCAT TTTGGATGAA
GCATGGCTCA TGCTCGGCCA TCCGATTTTC CGTAGCAAGA TCCGCGAGTG GCTGAAAGTG
CTTCGCAAGG CGAATTGCGC CGTGGTGCTT GCTACGCAGT CGATCTCGGA CGCTGAGCGC
TCCGGCATCA TTGATGTGCT CAAGGAATCC TGCCCCACAA AGATCTGCCT TCCAAACGGC
GCTGCTCGGG AGCCGGGGAC GCGCGAGTTC TACGAACGGA TCGGCTTCAA CGAAAGACAG
ATTGAGATCG TTTCGATCGC CATTCCGAAG CGAGAGTACT ACGTCGCCAC TCCGGAAGGC
CGACGGCTTT TCGAAATGGC TCTTGGTCCC GTGGCACTCA GTTTCGTGGG GGCATCGGGG
AAAGAGGATT TGAAGCGCAT CCGCGCACTC AAATCCGAGC ATGGCCGCGA TTGGCCAATC
CACTGGCTTG AAACGAGAGG AGTTCAAGAT GCCGCAGCGA TACTCAAAAA ATAG
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| Protein sequence | MVALKRFRAT GPSFADLVPY AGLVDNGVLL LKDGSLMAGW YFAGPDCESA TDLERNELSR
QINSVLSRLG SGWMIQVEAI RIPTVDYPSD DHCHFPDPVT RAIDAERRAH FAHTQGHFES
KHALILTYRP LESRKAALSK YIYSDEESRK KSYADTVLFV FKNAVREIEQ YFANTLSIKR
METRETVKRG GERVARYDEL LQFVRFCITG ESHPVRLPDI PMYLDWLATA ELEHGLTPKV
ENRFLGVVAI DGLPAESWPG ILNSLDLMPL TYRWSSRFIF LDAEEARAKL ERTRKKWQQK
VRPFFDQLFQ TQSRSVDQDA MLMVAETEDA IAQASSQLVA YGYYTPVVVL FDDDRNTLQE
KAESVRRLVQ AEGFGARIET LNATDAYLGS LPGNWYCNIR EPLINTSNLA DLIPLNSVWS
GNAVAPCPYY PPNSPPLMQV ASGSTPFRLN LHVDDVGHTL VFGPTGSGKS TLLALIAAQF
RRYDRAQIFA FDKGNSLLSL TLAAGGYHYD LCGDDAEERN ALAFCPLSEL KSDADRAWAT
EWIEMLIALQ GVIITPDHRN AISHQVSLMA SATGRSLSDF VSGVQMREIK DALHHYTVDG
PMGQLLDAEE DGLTLGALQT FEIEQLMNMG ERNLVPVLTY IFRRIEKRLD GSPSLIILDE
AWLMLGHPIF RSKIREWLKV LRKANCAVVL ATQSISDAER SGIIDVLKES CPTKICLPNG
AAREPGTREF YERIGFNERQ IEIVSIAIPK REYYVATPEG RRLFEMALGP VALSFVGASG
KEDLKRIRAL KSEHGRDWPI HWLETRGVQD AAAILKK
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