Gene Smed_5376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5376 
Symbol 
ID5319678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp342561 
End bp343538 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content60% 
IMG OID640777146 
Productconjugal transfer protein TrbB 
Protein accessionYP_001314078 
Protein GI150377483 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID[TIGR02782] P-type conjugative transfer ATPase TrbB 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.873553 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.169831 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCCAGC TTCGTTCTCA CCCCCGACTC GTCCGCAAGC TTCAGGAGGC ACTCGGCGAT 
CAGCTCTGCG TCGCCCTGGA TGACGCGAGT GTCGTTGAGA TCATGCTCAA TCCAGACGGA
AAGTTGTTCA TCGACCGGTT GGGCGACGGT GTTGCGCTTG CCGGGGAAAT GTCATCAGCT
GCTGCTGAAA TTGTTGTCGG TACAGTGGCG CATGCGCTCC AATCCGAGGT CGACAGGGAA
CAGCCGATCA TCTCCGGTGA GTTGCCGATC GGTGGTCACC GTTTCGAGGG GCTCCTTCCC
CCGGTCGTGG CAAGGCCTGC CTTTGCGATT CGGCGCCGCG CCTCACGCCT CATCCCCCTC
GAAGACTATG TCCGCACCGG GGTGATGACC GAAGATCAAG TCTCGACTAT CCGAAGTGCA
ATTTCCTCGA GGCTCAACAT CATCATCTCC GGAGGGACCG GTTCCGGCAA GACGACGCTT
GCAAATGCTG TCATCGACGA GATCGTCAAA ACCAGGCCGG ATGATCGCCT CGTGATTCTT
GAAGATACCG CGGAAATTCA GTGCGCGGCC CAGAACGCCG TTCTTCTACA TACCAGTGAT
AAGGTCGACA TGGCGCGGCT CCTTAAGAGC ACCCTGCGCT TGCGTCCCGA CAGGATCGTC
GTGGGCGAAG TGCGCGACGG CGCGGCCCTA ACGCTACTCA AGGCCTGGAA CACCGGTCAT
CCCGGTGGGG CGGCTACGAT TCACTCCAAC ACCGCCATGT CGGCGCTCCG CCGTCTTGAA
CAGCTGACGG CCGAGGTAAG CCAGCAGCCA ATGCACGAGG TTATTGGAGA AGCCGTCGAT
CTGATTGTTT CGATCGAGCG CACGCCCCGC GGGCGACGCG TTCGCGACGT CATCCGCGTC
GAGCGTTTCG CCGGCGGCGA GTATGAGATC GAATCCGATC AGCTCACGGA AGAACAGGAG
GCGCGCCATG TTGCATAA
 
Protein sequence
MTQLRSHPRL VRKLQEALGD QLCVALDDAS VVEIMLNPDG KLFIDRLGDG VALAGEMSSA 
AAEIVVGTVA HALQSEVDRE QPIISGELPI GGHRFEGLLP PVVARPAFAI RRRASRLIPL
EDYVRTGVMT EDQVSTIRSA ISSRLNIIIS GGTGSGKTTL ANAVIDEIVK TRPDDRLVIL
EDTAEIQCAA QNAVLLHTSD KVDMARLLKS TLRLRPDRIV VGEVRDGAAL TLLKAWNTGH
PGGAATIHSN TAMSALRRLE QLTAEVSQQP MHEVIGEAVD LIVSIERTPR GRRVRDVIRV
ERFAGGEYEI ESDQLTEEQE ARHVA