Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5376 |
Symbol | |
ID | 5319678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 342561 |
End bp | 343538 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640777146 |
Product | conjugal transfer protein TrbB |
Protein accession | YP_001314078 |
Protein GI | 150377483 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.873553 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.169831 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCCAGC TTCGTTCTCA CCCCCGACTC GTCCGCAAGC TTCAGGAGGC ACTCGGCGAT CAGCTCTGCG TCGCCCTGGA TGACGCGAGT GTCGTTGAGA TCATGCTCAA TCCAGACGGA AAGTTGTTCA TCGACCGGTT GGGCGACGGT GTTGCGCTTG CCGGGGAAAT GTCATCAGCT GCTGCTGAAA TTGTTGTCGG TACAGTGGCG CATGCGCTCC AATCCGAGGT CGACAGGGAA CAGCCGATCA TCTCCGGTGA GTTGCCGATC GGTGGTCACC GTTTCGAGGG GCTCCTTCCC CCGGTCGTGG CAAGGCCTGC CTTTGCGATT CGGCGCCGCG CCTCACGCCT CATCCCCCTC GAAGACTATG TCCGCACCGG GGTGATGACC GAAGATCAAG TCTCGACTAT CCGAAGTGCA ATTTCCTCGA GGCTCAACAT CATCATCTCC GGAGGGACCG GTTCCGGCAA GACGACGCTT GCAAATGCTG TCATCGACGA GATCGTCAAA ACCAGGCCGG ATGATCGCCT CGTGATTCTT GAAGATACCG CGGAAATTCA GTGCGCGGCC CAGAACGCCG TTCTTCTACA TACCAGTGAT AAGGTCGACA TGGCGCGGCT CCTTAAGAGC ACCCTGCGCT TGCGTCCCGA CAGGATCGTC GTGGGCGAAG TGCGCGACGG CGCGGCCCTA ACGCTACTCA AGGCCTGGAA CACCGGTCAT CCCGGTGGGG CGGCTACGAT TCACTCCAAC ACCGCCATGT CGGCGCTCCG CCGTCTTGAA CAGCTGACGG CCGAGGTAAG CCAGCAGCCA ATGCACGAGG TTATTGGAGA AGCCGTCGAT CTGATTGTTT CGATCGAGCG CACGCCCCGC GGGCGACGCG TTCGCGACGT CATCCGCGTC GAGCGTTTCG CCGGCGGCGA GTATGAGATC GAATCCGATC AGCTCACGGA AGAACAGGAG GCGCGCCATG TTGCATAA
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Protein sequence | MTQLRSHPRL VRKLQEALGD QLCVALDDAS VVEIMLNPDG KLFIDRLGDG VALAGEMSSA AAEIVVGTVA HALQSEVDRE QPIISGELPI GGHRFEGLLP PVVARPAFAI RRRASRLIPL EDYVRTGVMT EDQVSTIRSA ISSRLNIIIS GGTGSGKTTL ANAVIDEIVK TRPDDRLVIL EDTAEIQCAA QNAVLLHTSD KVDMARLLKS TLRLRPDRIV VGEVRDGAAL TLLKAWNTGH PGGAATIHSN TAMSALRRLE QLTAEVSQQP MHEVIGEAVD LIVSIERTPR GRRVRDVIRV ERFAGGEYEI ESDQLTEEQE ARHVA
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