| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5375 |
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| Symbol | |
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| ID | 5319677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | + |
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| Start bp | 341930 |
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| End bp | 342550 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640777145 |
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| Product | putative autoinducer synthesis protein |
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| Protein accession | YP_001314077 |
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| Protein GI | 150377482 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG3916] N-acyl-L-homoserine lactone synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0563585 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.248437 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGTAA TTGCGATTTC CGCGCAGCCG GATCTTCGCG CGAAGCAACT TCTCGAACAG
CATCACAGGC TCCGAGCGCG GGTCTTTTCC GATCGGTTGG GCTGGGCGGT CTGCGTTCTC
GACGGACTGG AATCGGACGC TTTTGATGAT CTCGAGCCAA CCTACATCAT CGCTGTCTCG
GACAGCGGCC GGGTCGCAGG ATGCGCCAGG CTCCTTCCGG CAATCGGCCC AACAATGGTG
GCTGAGGTCT TCTCCTCACT TCTCCCGGAC GGACGGCTGA AAGCTCACCC CCAGATGATC
GAAAGCTCCC GCTTCTGTGT CGAAACGGCT CTAGCGGAGG GAAGGGCAGG CGGCTTGGTC
CATGAGGCGA CGCTGACTAT GTTTGCGGGC ATCATCGAAT GGTGCATGGC GAATGGTTAC
ACCGAGATTG TCACGGTGAC CGATCTCCGA TTTGAGCGGA TCCTCGCCCG CGTCGGATGG
CCATTGCAGC GTTTGAGTAA GCCCAAGACG ATCGGTCCCA CGATAGCCGT GGCCGGCACG
CTGCCGGTCA CAGCGGACAA CGTTCTCAGG CTTCGCCCTT CCAACTATCG CTCTGAACTT
GCCCCTCCCT GCCGATTTTA A
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| Protein sequence | MQVIAISAQP DLRAKQLLEQ HHRLRARVFS DRLGWAVCVL DGLESDAFDD LEPTYIIAVS
DSGRVAGCAR LLPAIGPTMV AEVFSSLLPD GRLKAHPQMI ESSRFCVETA LAEGRAGGLV
HEATLTMFAG IIEWCMANGY TEIVTVTDLR FERILARVGW PLQRLSKPKT IGPTIAVAGT
LPVTADNVLR LRPSNYRSEL APPCRF
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