| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5372 |
|---|
| Symbol | |
|---|
| ID | 5319674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 339285 |
|---|
| End bp | 340004 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640777143 |
|---|
| Product | 5-formyltetrahydrofolate cyclo-ligase |
|---|
| Protein accession | YP_001314075 |
|---|
| Protein GI | 150377480 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0212] 5-formyltetrahydrofolate cyclo-ligase |
|---|
| TIGRFAM ID | [TIGR02727] 5,10-methenyltetrahydrofolate synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.172427 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTGA GCGAGATTGA AAAGGAAGCG ACAAGCATGG ACATCGAGGA CGACGATATT
CCCCCGGCTT TCGCCTCGCC GCCATGCCTG ATGCACGAAC TCGACCCGGC CTATGCCGGC
CTGTCATCCG ACCGGACGAA CAATGTCGAT GTCAGGCGGT GGCGGAAAAG CGAACGTGCT
CGCCTAATCG CTGAACGCCT GGCAATGGCT CCCGACCATC GGGCAATGTG CGAAGCGCAG
ATCGTCAATC GCATACTTGC CGAAATCGGA GATATGCGCG GCCTTGTAGT CAGTTTGTAC
TGGCCTTTTC GGGGTGAACC CGACCTCAGA CCGTTGATGC GGCAAATATC CGACCAAGGC
GGCGAATGTG CGCTTCCCGT GGTTGTTCAG AAGGAGCAGC CTCTGGAATT CCACCTCTGG
CGGCCGGGGG ACAAGCTGAC CCGTGGCATC TGGAACATAC CCGTTCCGGC CACGCCTCAT
TCATGCACGC CGGATATCGT CATCGCACCG GTCGTGGGCT TCGACGCATC GGGCTATCGC
CTCGGTTATG GCGGGGGCTA TTACGACCGG ACGCTGGCCG GAATGACAGC GAAGCGGCGG
GTGATGGGCG TTGGCTTCGC GCAGGCAAGA ATAAGAACGA TATACCCACA GAACCACGAC
GTTCGAATGG ACGTCGTGGT AACCGACTCT ACCACTGATG GTTACAGCGC CACGCGGTGA
|
|---|
| Protein sequence | MALSEIEKEA TSMDIEDDDI PPAFASPPCL MHELDPAYAG LSSDRTNNVD VRRWRKSERA
RLIAERLAMA PDHRAMCEAQ IVNRILAEIG DMRGLVVSLY WPFRGEPDLR PLMRQISDQG
GECALPVVVQ KEQPLEFHLW RPGDKLTRGI WNIPVPATPH SCTPDIVIAP VVGFDASGYR
LGYGGGYYDR TLAGMTAKRR VMGVGFAQAR IRTIYPQNHD VRMDVVVTDS TTDGYSATR
|
|---|
| |