| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5358 |
|---|
| Symbol | |
|---|
| ID | 5319660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 322150 |
|---|
| End bp | 323859 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640777130 |
|---|
| Product | potassium-transporting ATPase subunit A |
|---|
| Protein accession | YP_001314062 |
|---|
| Protein GI | 150377467 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2060] K+-transporting ATPase, A chain |
|---|
| TIGRFAM ID | [TIGR00680] K+-transporting ATPase, KdpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.267227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0726113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCG TCGGGTGGCT GCAGATCAGC CTCCTCTTTC TCGCCGTCCT CGTCGTCATC
AAGCCGCTGG GGCTTCACAT GGCGCGGGTC TTTTCCGGTG AGCGCAACGC ATTCTCCCCG
CTTTTCAGCC CGATCGAGCG TGGCCTCTAT GCGGCCGCCG GAGTCGATCC GGTCAAGGAG
CAGGGTTGGC TTGCCTACAC GCTGTCGATG CTGGCTTTCA GTCTCGCAGG CTTCGTCGGG
CTCTATGCGA TCCTCAGGCT CCAGGCCTGG CTGCCATTGA ACCCGCAGGG TTTCGGCAAT
GTGCCGCCGG GCCTTGCCTT CAACACGGCC GTCAGCTTTG TCACCAACAC CAACTGGCAG
AACTACGCCG GCGAGACGAC CCTCAGCCAT TTCAGCCAGA TGATGGGGCT CACGGTCCAG
AACTTCGTGT CCGCCGCCAC GGGCATCGCG ATTGCGCTCG CGATCATCAG GGCATTCGCG
CGGTCGGCCG CGTCGACGGT CGGGAACTTC TGGGTGGATC TCACGCGGGC CACGCTCTAT
GTCCTCCTGC CGCTTTCCAT AGTCGTGGCT CTCGCATTCG TGGCGATGGG ACTGCCGCAG
ACCTTCGATG GGGCAGTGAA CGCGACGACG CTCGAAGGCG CGCGACAGAC CATCGCGCTC
GGGCCGGTCG CCAGCCAGGA GGCGATAAAG CAGCTCGGCA CCAATGGCGG CGGCTTCTTC
AACGTCAATG CCGCCCACCC CTATGAAAAT CCGACGGCGC TTTCCAACTA CCTCAACATC
TTTGCGATGC TGTCGATCTC GGCGGCGCTG CTCTATACCT TCGGCCAACT CGTCGGCAAC
TGCCGTCAGG GCTGGGCCTT CGCCGCGGTT ACCGCTTTCT TCCTGATCGC GGGCGTAGGC
GTGGTCTACT GGGCCGAGGC GCAGGGAAAT ACGATCCTGT CGGCGGTCGG TCTCGATCCG
GCCGACGGCA ATATGGAAGG CAAGGAAGTC CGCTTCGGGC AGGCCATGAC CGCGCTTTAC
GCGACGGTGA CCACCGGGCT TTCGAACGGC GGCGTCAACG GCATGCACGG CTCCTTGACC
GGGCTCGGCG GTCTTGTGCC GATGTTTCTC ATGCAGCTTG GCGAGGTTCT GCCCGGAGGT
GTCGGCTCCG GCCTCTATGG CATGATCGTC TTCGCGATCC TCGCCGTCTT CGTTGCCGGC
CTAATGGTCG GCCGCACGCC GGAACTGCTC GGCAAGAAGA TCGAAGCGCG CGAGATGAAA
TTCGCAATCC TTGCCGTGCT CGTTCTGCCG CTTACCGTCC TCGGTTTTTC CGCGGTTTCC
GCGGTCACGC CTTCGAACGT ATCGAGCATC GGCACTGGCG GCCCGCACGG TCTCTCGGAA
ATCCTCTATG CCTATACGTC GGCCGCCGGA AACAATGGTT CGGCTTTCGC CGGGCTGACC
GGGAACACGC CGTGGTACAA TACGACGCTC GGGATTGCGA TGCTGCTCGG CCGCTTCGCC
TATGCAGTCC CCGTGCTTGC CATCGCCGGT TCGATAGCCG TCAAAACCCG CGTCGCGGCT
TCGAAGGGTA CCTTCCCGAC CGACACGCCG CTCTTTGCTG GTCTGCTGAT CGGTATCATC
CTTATTCTTG GCGGTCTGCA GTTTTTCCCC GCGCTCGCTC TCGGTCCCAT CATCGAGCAT
TTTGCGATGC TCTCGGGCGA GACCTTCTGA
|
|---|
| Protein sequence | MTIVGWLQIS LLFLAVLVVI KPLGLHMARV FSGERNAFSP LFSPIERGLY AAAGVDPVKE
QGWLAYTLSM LAFSLAGFVG LYAILRLQAW LPLNPQGFGN VPPGLAFNTA VSFVTNTNWQ
NYAGETTLSH FSQMMGLTVQ NFVSAATGIA IALAIIRAFA RSAASTVGNF WVDLTRATLY
VLLPLSIVVA LAFVAMGLPQ TFDGAVNATT LEGARQTIAL GPVASQEAIK QLGTNGGGFF
NVNAAHPYEN PTALSNYLNI FAMLSISAAL LYTFGQLVGN CRQGWAFAAV TAFFLIAGVG
VVYWAEAQGN TILSAVGLDP ADGNMEGKEV RFGQAMTALY ATVTTGLSNG GVNGMHGSLT
GLGGLVPMFL MQLGEVLPGG VGSGLYGMIV FAILAVFVAG LMVGRTPELL GKKIEAREMK
FAILAVLVLP LTVLGFSAVS AVTPSNVSSI GTGGPHGLSE ILYAYTSAAG NNGSAFAGLT
GNTPWYNTTL GIAMLLGRFA YAVPVLAIAG SIAVKTRVAA SKGTFPTDTP LFAGLLIGII
LILGGLQFFP ALALGPIIEH FAMLSGETF
|
|---|
| |