| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5289 |
|---|
| Symbol | |
|---|
| ID | 5319591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 252933 |
|---|
| End bp | 253823 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640777066 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001313998 |
|---|
| Protein GI | 150377403 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.992616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCACA ACGATGAACT TCCACCAGTC GAGGCGCTTC AGGCCGTCCT GTCGGCTTAC
CGCCTCGGAT CGTTCTCGGC TGCCGCGGCT GCGCTTGGCA TCACCCATGG CGCAGTCAGC
CGACGTGTCG CGGCGACGGA ACGGTGGGCC GGTTTCCGTC TTTTCGGCCG GCACGGGCGA
GGCGTGCGAG CGACACTCGA CGGCGAGCGC TTCGCCGCAC GCATAGAACT CGCAATGGCG
ATGCTGCACG ACAGTCGAGG CACGGGTCGT TCCGATCATG GGCTCGATAC CGTGCGTGTC
GGCGTCGTGC AGTCCTTTGC GCGTCTTTGG TTGACACCGA GACTGGCAGC CCTCGAAGGC
ACGCCGCCCG ATCTCAGGAT CGAGATGGAG ATCGACAACG CACATATGGC ACTTTCGGAT
GCGCGCATTG CCATTCGGCT GGGCCGTGGC GGCTGGCCGA ATGTCGTCTC GGAGCCTCTG
TTCGACGAAG GTTTGCAGCC TTTTGCCTGC CAAAAGATTG CTGTTGAACT GGGGCCTGAT
CCGGCTGCCA GGGATCTGCT GCGTTATCCC CTGATCCACG ATGCGTCCGA GGCTGGTTGG
CGTCGCTGGC TCACCGCGCA GGATTTGGTG TACCACCCCA AAGGCAGCGA TCGTACCTTC
GGCGGCCACG ATCTGGCTTT GATCGCTGCG GCTTCGGGCA TGGGCGTTGC TTTGGCGCGC
AAGCCCTATG GGAGCGAGCA GCACGAACGG CTGGGGCTTG TTTCCGTTCA TCCGGCTGTG
GTGGATAATG TAGAACGGTT TCACATCGTT ACGCGATCAG GTGCGCGGCA CGGGGCAATC
GAGAGACTGA TCCAACGTCT CCAAAGCCAG GCTCGTCAGT CACAAGCCTA G
|
|---|
| Protein sequence | MTHNDELPPV EALQAVLSAY RLGSFSAAAA ALGITHGAVS RRVAATERWA GFRLFGRHGR
GVRATLDGER FAARIELAMA MLHDSRGTGR SDHGLDTVRV GVVQSFARLW LTPRLAALEG
TPPDLRIEME IDNAHMALSD ARIAIRLGRG GWPNVVSEPL FDEGLQPFAC QKIAVELGPD
PAARDLLRYP LIHDASEAGW RRWLTAQDLV YHPKGSDRTF GGHDLALIAA ASGMGVALAR
KPYGSEQHER LGLVSVHPAV VDNVERFHIV TRSGARHGAI ERLIQRLQSQ ARQSQA
|
|---|
| |