| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5287 |
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| Symbol | |
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| ID | 5319589 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 249324 |
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| End bp | 251270 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640777064 |
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| Product | serralysin |
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| Protein accession | YP_001313996 |
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| Protein GI | 150377401 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCGA CGACGACCTA TGCCCCGACT GGTAATGCCT ATATCGACGG GCTCCTTGGC
GACTGGAAAT GGGCGGTCAA GGACTTCACC TTCAGCTTCC CAACCAGCGC TTCATTCTAC
GGCTCCGGTT ATGGCAATGG CGAACCGCAA AAAGGTTTTG CCGCGCTGAA CGCCGCACAG
CAGACTACCG CGCGAGCTGT CTTCGATCAG TTCTCCTCCG TTGCCAAAGT ATCATTCACC
GAGATTGCAG AGAGCGCGAC CAAGCACGCC GATGTCCGCC TTGCCTCGTC CGACGCTCCG
AGCACCGCAT GGGCGTATTT TCCGTCGACT GCTGCAGAAG GCGGGGACGC GTGGTTCAAC
AGCTCGTCCG GCTATTACAG CCGCCCGATG AAAGGAAACT ACGCCTATCT GACATTCCTC
CACGAGATCG GCCACGCGCT TGGGCTGGAA CACGCCCATG AGGGCAACGT CATGCCTGCG
AACCGCGACT CGATGGAATA CACGGTCATG AGTTATCGCT CCTATGTCGG AGCCTCGACC
ACGACCGGCT ATATCAACGA GACCTGGGGA TATGCGCAAT CGCTGATGAT GTATGATATC
GCTGCCTTGC AGCATATTTA CGGCGCGGAT TTCACCACCC AGAGCGGGAA CACGACTTAC
CGATGGAGCC CGACGTCGGG CGAGATGTTC ATCAATGGCG TGGGCCAGAA CGCACCCGGC
GGCAACAAGA TCCTGCTTAC GGTCTGGGAT GGCGGCGGAA CCGACACATA CGACTTCTCC
AACTACACAA CTGCACTGAA GGTCGATCTC CGTCCGGGCG AATGGACGAC CACCTCGGCG
GTCCAGTTGG CGAAGCTGCG CTACGACGAT TCGAAAGTGG CGATCGGCAA TATCGCCAAC
GCCCTGCAAT ATCAGAGTGA TGCGCGCTCT CTTATCGAGA ATGCAAAGGG TGGCGCGGGC
AATGACGTTA TCACCGGAAA CGCTGCTGCA AATGTTCTTT GGGGTAACGG CGGCAATGAC
AGGCTGATCG GCGCCAACGG AAACGACAAC CTTGTTGGCG GTGCGGGCGC GGACCGGCTC
GAGGGTGGCA ACGGCAACGA TCTGGCGAAC TACTACAACG CCGCGGCTGG CGTCGTTGCC
GACATTTATT CTCCCGGTTC CAACAGAGGG GAAGCGGCGG GAGACACCTA TGTGTCCGTC
GAGCGGCTTT ACGGTTCCGC CTTCGGCGAT ACTCTTGCCG GAGATAGGTT CGCAAACCTT
CTGAACGGGC TAGCGGGTAA TGACGTGCTT CACGGGCGTG CCGGCAACGA CACTCTCATC
GGCGGCGACG GAAACGACAG TCTTGTCGGC GGTGCCGGCG CCGACCGGCT CGACGGCGGC
AATGGCGTCG ATCTGGCGAA TTACTACAAT GCCGCCTTGG GGCTAGTCGC TGATCTCTAT
TCCCCTGTCT CGAACACCGG GGAAGCGGCC GGTGACACCT ATCTGTCCGT CGAGCGGCTC
TATGGTTCAG CTTTCAACGA CAGTTTGCGC GGAGACAATA TCGCAAATCT TCTGAACGGG
CTTGCCGGTA ACGATGTGCT CAACGGACGC GGTGGCAACG ACACCCTCAT CGGCGGGGAA
GGCGCCGACC GGCTGATTGG CGGTGGCGGC TCGGACATGT TCGTATTTCA GACAGCGACG
CAATCGCGAC CGGCTGCGAT GGACGTCATC GATGATTTTG CGCGAGGCAT TGATCGGATC
GATTTGCGAT CGATCGATGC CAGCAGCAAC CTCAGCGGGG ATCAGGCGTT TCTTTTTATC
GGCGGCAACG GGCTCCACGG AAAATCAGGT GAACTTAACT TCAGGAGTGG GATAGTCTCG
GGTGATGTCA ATGGCGATGG CCTTGCAGAT TTTCAGATCA AGGTCATGAA TCTGTCGGCG
CTTTCCGCGA GCGACTTCTT CGTCTGA
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| Protein sequence | MPSTTTYAPT GNAYIDGLLG DWKWAVKDFT FSFPTSASFY GSGYGNGEPQ KGFAALNAAQ
QTTARAVFDQ FSSVAKVSFT EIAESATKHA DVRLASSDAP STAWAYFPST AAEGGDAWFN
SSSGYYSRPM KGNYAYLTFL HEIGHALGLE HAHEGNVMPA NRDSMEYTVM SYRSYVGAST
TTGYINETWG YAQSLMMYDI AALQHIYGAD FTTQSGNTTY RWSPTSGEMF INGVGQNAPG
GNKILLTVWD GGGTDTYDFS NYTTALKVDL RPGEWTTTSA VQLAKLRYDD SKVAIGNIAN
ALQYQSDARS LIENAKGGAG NDVITGNAAA NVLWGNGGND RLIGANGNDN LVGGAGADRL
EGGNGNDLAN YYNAAAGVVA DIYSPGSNRG EAAGDTYVSV ERLYGSAFGD TLAGDRFANL
LNGLAGNDVL HGRAGNDTLI GGDGNDSLVG GAGADRLDGG NGVDLANYYN AALGLVADLY
SPVSNTGEAA GDTYLSVERL YGSAFNDSLR GDNIANLLNG LAGNDVLNGR GGNDTLIGGE
GADRLIGGGG SDMFVFQTAT QSRPAAMDVI DDFARGIDRI DLRSIDASSN LSGDQAFLFI
GGNGLHGKSG ELNFRSGIVS GDVNGDGLAD FQIKVMNLSA LSASDFFV
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