| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5241 |
|---|
| Symbol | |
|---|
| ID | 5319543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 203666 |
|---|
| End bp | 204616 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640777018 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_001313950 |
|---|
| Protein GI | 150377355 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.635479 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA CCGGGCTCAG AACCGCAGCG CTGGCTGCGG GCCTTGCCAC CTTGTTGACG
TCAAGCGCAC TCGCGGCCGA CGTCAAGGCA ACGATGATCA TCTACCTCGA TCCGAGTGTG
CAGTTCTTTA ATCCCGTGGT GAAGGGAGCG CAAGACGCCG CCGCCCAATT CGGCGTCGAC
CTCGACGTGC AGTATGCCAA CAACGATCCG GTGCGCCAGA ATGACCTGAT CGAGAGCGCG
ACGGTCAGCG GCGTTGACGG CATCGCCGTC GCGATCTCCA GTTCGGACGC ATTCGACGAG
AGCATCTGCG CTGCAGTGAA GGCCGGCATC ATCGTCATCG GCTTCAACAA CGATGACCTC
GACGGCGCCA AAGGGAACTG TCGCCAGGCC TATGTCGGCA TGGACGAGCT TGCCTCAGGC
TATGAGCTCG GCAACCGCAT GATCAAGGAA TTTGGCCTCA AGTCCGGCGA CGTCGTCTTC
AACCCGCGCG AAATTCCGGA AGCGAGCTTT GCAGTCGCCC GTGGTGGCGG CATCGAGAAG
GCGATGACGG AAAACGGCAT CAAGGTGGAG ACGGTTCGTG CCGGCCTCGA CCCCGCCGAA
GCGCAGAACA TCATCGCGCA ATTCCTCATC GCCAACCCGA ACGTGAAGGC GCTGTTCGGC
ACCGGCTCGG TCACCTCCAC GGTGGGCGCG GGCGCCATCA AGGATGCCGG AGTAAACATT
CCATTCGGCG GTTTCGACCT TGCGGTCGAG ATCGTAAACG CGGTGGATTC CGGCGCTATG
TACGCGACCA TGGACCAGCA GCCCTATCTG CAGGGCTACT ACCCGATCGC CCAGATCGCG
CTCGCCAAAA AATACGGACT GACACCGACC GACATCGACA CGGGTCAGGG CGCCTTCCTC
GACAAGTCGC GCATCGGTTC GGTCAAGCCG CTGATCGGCA GCTATCGCTA A
|
|---|
| Protein sequence | MKLTGLRTAA LAAGLATLLT SSALAADVKA TMIIYLDPSV QFFNPVVKGA QDAAAQFGVD
LDVQYANNDP VRQNDLIESA TVSGVDGIAV AISSSDAFDE SICAAVKAGI IVIGFNNDDL
DGAKGNCRQA YVGMDELASG YELGNRMIKE FGLKSGDVVF NPREIPEASF AVARGGGIEK
AMTENGIKVE TVRAGLDPAE AQNIIAQFLI ANPNVKALFG TGSVTSTVGA GAIKDAGVNI
PFGGFDLAVE IVNAVDSGAM YATMDQQPYL QGYYPIAQIA LAKKYGLTPT DIDTGQGAFL
DKSRIGSVKP LIGSYR
|
|---|
| |