Gene Smed_5187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5187 
Symbol 
ID5319489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp141991 
End bp143136 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content57% 
IMG OID640776965 
Producthypothetical protein 
Protein accessionYP_001313897 
Protein GI150377302 
COG category[R] General function prediction only 
COG ID[COG0628] Predicted permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.503723 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGACA ATCCATCATC CCAACGAAAC CCGGACCCGG TTAATCCCGC CGCGCGGCCG 
TCTATCGAGC CGAGAATAAC CGAGATCGCA CGGATCGGCC TGGTTGGACT TTTCGCCTAC
TGGTCTCTGA CCTTGATCGC GCCATTTGCG ATTATTCTTA TTTGGGCCGC GATCCTGGCT
GTAGCCCTTT ATCCGGCCTA TACTGCGCTT TCAGCTGTCC TCGGCCACCG GCCCCGTGTG
ACGGCGCTCG TCATTACAAT GCTGGGGCTG CTCGTTATCG TCGCTCCGCT CGCAGCCATT
GCGATCAGCT TTGCCGAGGG CCTACAGGTG GTGCTTGCGA GGCTGAATGA TCGATCTCTT
CTGATTTCGG CGCCACCCGA CAGTATTCGC AGTTTTCCGC TTATCGGCGA GCGCATCTAT
TCGGTCTGGA GTATGGCTTC TGACAATCTT GAGGCCGTAT TGCAACAGAT CAAGCCTTCG
CTCCTGCAAG CGGGCAGCAA GGCGCTCAGC ACAATCGCGT CGATTGGCGC CGACCTGCTC
AGCTTTGTGG TTTCCGTTCT TGTCGCCGGT TTTCTCTTCG GGTCCGGAGC ACGGCTGGCA
AACAGTGCGC GGGGATTCGC GAGCAGAATA GGTGGGGAGA GAGGCGTTGG CTTTTTGCAA
CTGGCAGCGG CAACGATCCG CAACGTGGCG CGGGGTGTGA TCGGTGTCGC CCTCTTGCAA
GCCTTTCTCT GTGTTTTGAT CCTGAGCCTT TTCAAAGTTC CTGCACCCGG TGCAATCGCC
TTCGTCGTCC TTATCCTCTG CATCATTCAG ATTGGACCGG CGTTGGTTCT GCTGCCCGTG
ATCGTCTGGG CGTGGACCTC GATGGAATTC GGCATGGCTG CCTTGTTTAC GATCTTGCTG
ATACCGCTCC TCATCATCGA TAACGTCATG AAGCCAATCC TGGTCGCGCG CGGACTTTCC
ACACCGACAC TCGTGATTTT GCTGGGTGTG CTCGGCGGCA CGCTTTCGTA CGGATTGATA
GGACTTTTCC TGGGGCCGAT CGTTCTCAGC GTGTTCCACG ATTTACTGTT GATCTGGATG
AGCACGGACA CCGTGGGAGC GGAAAGGCTG CGGCTGGAGC CATCGAAACT GCCGAATCCA
ACCTAA
 
Protein sequence
MDDNPSSQRN PDPVNPAARP SIEPRITEIA RIGLVGLFAY WSLTLIAPFA IILIWAAILA 
VALYPAYTAL SAVLGHRPRV TALVITMLGL LVIVAPLAAI AISFAEGLQV VLARLNDRSL
LISAPPDSIR SFPLIGERIY SVWSMASDNL EAVLQQIKPS LLQAGSKALS TIASIGADLL
SFVVSVLVAG FLFGSGARLA NSARGFASRI GGERGVGFLQ LAAATIRNVA RGVIGVALLQ
AFLCVLILSL FKVPAPGAIA FVVLILCIIQ IGPALVLLPV IVWAWTSMEF GMAALFTILL
IPLLIIDNVM KPILVARGLS TPTLVILLGV LGGTLSYGLI GLFLGPIVLS VFHDLLLIWM
STDTVGAERL RLEPSKLPNP T