| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5180 |
|---|
| Symbol | |
|---|
| ID | 5319482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 134395 |
|---|
| End bp | 136899 |
|---|
| Gene Length | 2505 bp |
|---|
| Protein Length | 834 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640776958 |
|---|
| Product | nitrate reductase catalytic subunit |
|---|
| Protein accession | YP_001313890 |
|---|
| Protein GI | 150377295 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.727522 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCG AACTGACGCG GCGTGAGATC CTGAAGGCGC ATGCGGCCGG CATCGCCGCA
GCTACAGCGG GAATCGCGCT TCCGGCGGCG GCGCAACCCG TGCCGGGCGG CGTCGAAGCA
CTTCAGATAA AGTGGTCGAA GGCACCCTGC CGTTTCTGCG GTACCGGCTG CGGCGTCATG
GTCGGCGTCA AGGAGGGACA GGTCGTCGCC ACCCATGGCG ACATGCAGGC TGAGGTGAAC
CGCGGCCTCA ACTGCATCAA GGGCTACTTT CTGTCCAAAA TCATGTACGG CTCCGACCGA
CTGAAGACGC CACTCCTGCG CAAGCGCAAC GGCGCCTTCG CCAAGGAGGG CGAGTTCGAG
CCGGTGAGCT GGGACGAGGC CTTCGACATC ATGGCCGAGC AGGCGAAGAA GGTGCTGAAG
GACAAGGGCC CGACCGCCGT CGGCATGTTC GGCTCCGGGC AATGGACCAT CTTCGAGGGC
TACGCGGCAA CCAAGCTGAT GCGGGCCGGT TTCCGCTCCA ACAATCTCGA TCCCAATGCC
CGCCACTGCA TGGCCTCGGC GGCCTACGCC TTCATGCGCA CCTTCGGCAT GGACGAGCCG
ATGGGCTGTT ATGACGACTT CGAGCACGCG GACGCCTTCG TGCTCTGGGG CTCGAACATG
GCCGAGATGC ACCCGATCCT GTGGACGCGC CTCGCCGATC GAAGGCTCGG GTACGAGCAT
GTAAAGGTGG CGGTGCTCTC GACCTTCACC CATCGGAGCA TGGATCTGGC GGATATTCCG
ATCGTCTTCA AGCCGGGCAC TGATCTGGCG ATCCTCAACT ACATCGCCAA TCACATTATT
CAGACCGGCC AGGTAAACGA GGATTTCGTC AGCAAGCATA CGACCTTCAT GGTCGGCGCA
ACTGACATTG GCTATGGCCT GAGGCCCGAC AATCCGCTCG AGGTCAAAGC CGTGAACGCC
AAAGATGCGG CGAAAATGAC CCCGAGCGAC TTCGAGAGCT TCAAATCCTT CGTTTCGGAA
TACACGCTCG ACAAGACCGT CGAATTGACC GGCGTCGAGG CCGGGTTCCT CGAACAATTG
GCCGATCTCT ATGCCGATCC CAAGCGTAAG GTGATGTCGC TCTGGACCAT GGGATTCAAT
CAGCATGTAC GCGGCGTCTG GGTCAACCAC ATGGTCTACA ACCTGCATCT GTTGACGGGG
AAGATCTCTG AGCCGGGCAA CAGCCCGTTT TCGCTCACTG GCCAGCCCTC GGCCTGCGGC
ACGGCACGCG AGGTCGGCAC CTTTGCCCAC CGGCTGCCGG CCGACATGAC CGTGACTAAT
CCGGAGCACC GCAAGCACGC CGAGGAGATC TGGCGGATTC CCCACGGGAT AATTCCGGAA
AAGCCAGGCT ATCATGCTGT CGAACAGGAC CGCATGCTCA AGGATGGCAA GCTGAACTTT
TACTGGGTGC AGGTGAACAA CAACGTCCAG GCGGCTCCCA ATACGCAGAA CGAGACCTAT
CAGGGTTATC GTAACCCGGA TAATTTTGTC GTCGTCTCCG ACGTCTATCC GACGATCACC
GCAATGAGCG CCGACCTGAT CCTTCCGGCA GCCATGTGGG TGGAGAAAGA AGGCGCCTAT
GGCAATGCCG AGCGACGCAC CCATGTCTGG CACCAGCTCG TCGATGCGCC CGGCGAGGCG
CGTTCCGATC TCTGGCAAAT GGTGGAGTTT TCGAAGCGTT TCACCACCGA TGAGGTCTGG
CCGACCGACA TCCTAGACGC CAATCCCGGC TATCGTGGCA AGACCCTTTA CGAGGTGCTC
TTCAAGAACG GCAATGTCGA CCGCTTCCCG GCAAGCGACT TCAACAAGGA ATACGCCAAC
CGGGAGGCCG AGGCCTTCGG CTATTACATC CAGAAAGGTC TATTTGAGGA ATATGCCTCT
TTTGGGCGCG GGCACGGGCA TGACCTGGCG CCCTATGACC GTTACCACGA GGAACGGGGG
CTCCGCTGGC CTGTCGTCGA CGGCAAGGAG ACGCTCTGGC GCTACCGTGA AGGCTACGAT
CCCTACGTGA AGCCGGGGGA GGGCGTGAAG TTCTATGGTC GCCCGGACGG CAAGGCGGTG
ATCCTCGCCG TTCCTTACGA GCCGCCGGCG GAATCTCCCG ACGACGAATA CAATGTCTGG
CTGGTGACGG GCCGCGTCCT CGAGCACTGG CACTCCGGCT CGATGACGAT GCGGGTGCCG
GAACTCTACA AGGCGTTTCC CGGCGCAGTC TGCTTCATGA ATGCCGGTGA CGCCCGCGAT
CGCGGCATCA ATCAGGGGGC GGAGGTGCGG ATCGTCTCCC GCCGCGGCGA GATTCGTGCC
CGCGTCGAGA CGCGCGGCCG CAACCGCATG CCGCCGGGTG TCGTCTTCGT ACCCTGGTTC
GACGCCAGCA GGCTGATCAA CAAGGTGACA CTCGACGCAA CCGATCCCAT CTCGAAACAG
ACGGATTTCA AAAAATGCGC GGTCAAAATC GTCTCTGTCG CATGA
|
|---|
| Protein sequence | MTGELTRREI LKAHAAGIAA ATAGIALPAA AQPVPGGVEA LQIKWSKAPC RFCGTGCGVM
VGVKEGQVVA THGDMQAEVN RGLNCIKGYF LSKIMYGSDR LKTPLLRKRN GAFAKEGEFE
PVSWDEAFDI MAEQAKKVLK DKGPTAVGMF GSGQWTIFEG YAATKLMRAG FRSNNLDPNA
RHCMASAAYA FMRTFGMDEP MGCYDDFEHA DAFVLWGSNM AEMHPILWTR LADRRLGYEH
VKVAVLSTFT HRSMDLADIP IVFKPGTDLA ILNYIANHII QTGQVNEDFV SKHTTFMVGA
TDIGYGLRPD NPLEVKAVNA KDAAKMTPSD FESFKSFVSE YTLDKTVELT GVEAGFLEQL
ADLYADPKRK VMSLWTMGFN QHVRGVWVNH MVYNLHLLTG KISEPGNSPF SLTGQPSACG
TAREVGTFAH RLPADMTVTN PEHRKHAEEI WRIPHGIIPE KPGYHAVEQD RMLKDGKLNF
YWVQVNNNVQ AAPNTQNETY QGYRNPDNFV VVSDVYPTIT AMSADLILPA AMWVEKEGAY
GNAERRTHVW HQLVDAPGEA RSDLWQMVEF SKRFTTDEVW PTDILDANPG YRGKTLYEVL
FKNGNVDRFP ASDFNKEYAN REAEAFGYYI QKGLFEEYAS FGRGHGHDLA PYDRYHEERG
LRWPVVDGKE TLWRYREGYD PYVKPGEGVK FYGRPDGKAV ILAVPYEPPA ESPDDEYNVW
LVTGRVLEHW HSGSMTMRVP ELYKAFPGAV CFMNAGDARD RGINQGAEVR IVSRRGEIRA
RVETRGRNRM PPGVVFVPWF DASRLINKVT LDATDPISKQ TDFKKCAVKI VSVA
|
|---|
| |