| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5153 |
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| Symbol | |
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| ID | 5319455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 105534 |
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| End bp | 107723 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640776931 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001313863 |
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| Protein GI | 150377268 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG TGTCTGGCAG AGTCGCGGTT TTCAGGTGGC TAATGCCCCT GGCCATCGCA
ATGGCCTTAA TCGGGGGCAT ATACCTTGCC GTCCGCTGGT CAGCTCACCA ATCCGATGCT
GTAGCAATAG AACGGCAGCA ACAACTCGTC GAGCTCGTCA TCTCCAAGAT GCAAGGCAGT
ATCGCCCACG ATCAGGAGAG TGTCACAGTC TGGGATGACG CAGTCAGAAA AGTGTCTCTG
GAATGGGATG CGGGGTGGGT CGATTCCAAC CTGGGCAGCT GGATGCACAG CTATTTCCGA
CATGACGGCG CCTTCGTGAT CAGCCCGGAC CGCAAGCCGG TCTTCGCCTA TCTCGACGGA
CGAACCGACG ACGGGGGGAT TTTCAGGAAC ATAGCGCCTG CGGCAATGCC GCTTGTCGCC
AAGCTGCAGG AAAGGCTCGC AGCCGGCGAC GAGGCAGGCA CCAGTGATCA GGTGCTGTCG
ATCGGCGAGA GCGATCTGGT CCGGATCGAA GGCCGCCCGG CAATAGTCAG CGCTAAACCG
ATCGTGTCGG ACACCGGTGA CATCGTTCAG GAGCCCGGTC GGGAGTTTCT GCACTTGGCG
ATCCGTTTCC TCGACGACGA TTTTCTCACC GGTCTTGGTG CGGATTACGG CTTCGAAGAT
CTGCGCTTTT CCGTTTCGCC GGATCTCGGT CGGAACCGGT CCTATGCGCC GATCGTACGG
TCCTCCGGAG AACCAATCGG ATATTTTTCC TGGCTGCCAT TTAGACCCGG TGCCGCCGTG
ATGAAGGCCA CTGCGCCGGT GCTTCTGATA TCCGGCCTTC TGCTTTTCAC GCTTACGAGC
GGACTGAGCG TCGTCTTGCG GAGGCGGTCG AGACGCCTTC AGGAAAGTCA AGCGGAGCTC
AATCACCTGG CGCGACACGA TCCCTTGACC GGGCTCGCAA ACCGTGCCTC TTTCAATCAG
TCGCTTGCCC AAGCCGTCGC CAGCTCGGCG GCCGATCAAG CCAACGCTCT TTTGTACCTC
GACCTCGATC GCTTCAAACA AGTGAACGAT ACGCTCGGCC ATCCCGTTGG CGATCGTCTG
ATGGTCGCGG TGGCAAAGCG GCTTATGGAA ACAGCGTCTG CTGGCGTCAT TTCCAGAATT
GGTGGCGATG AGTTTACCAT CGTCGTCGAG CGCACCCGCC AGGAAGAGGT GGAAAAACTC
TGTGACTCGC TGATTGCTGC GATCCGCCAG CCTTTCGAGA TCGACGGCCA ACCCATTCTT
ATCGGGCTTT CGATTGGTGT GGCGGTCGCA ACCGGGAATG ACGCCGATCC CGTCGAGATC
ACCCGGAAGG CCGATATCGC GCTATACCAC GCCAAATCGG CCGGCCGGAA CCGCTACGCC
GTCTTTGGCC CTCATATGGA CGAACTGATC AGGACGAAGC GGGATCTCGA GCAGGATCTG
CGGGCGGCGC TTCACGCGGG CAATCAGCTC GAAGTCTTCT ACCAGCCCGT ATATTCAGCA
CAGTCGCGCG AAATAAGCTC GCTTGAGGCT CTTGTTCGCT GGCGGCATCC GAGCAAGGGC
GCCATAGCAC CGGATGTCTT CGTTCCGCTG GCGGAGACCG CAGGCCTTAT CGATCGGCTC
GGCGCTTTCG TGCTGAAGGA AGCCTGTTCT ACTGCGCGCG AGTTCCCGAG CCTCGACATT
GCAGTGAACG TCTCCGCGAT AGAGCTGGGA CAACGGCATT ATGCGGCTCA GGTATTCTCA
TTGCTGCGGC AGTTCAGCGT CGAGCCCTGG AGATTGGAGC TCGAGATCAC CGAAACGGCT
CTGCTGGACG AGGCTGGCGT CTGCGAAAAA AACATCACGG CGTTGCGCGA CTTCGGCGTC
AAGTTCGCAC TGGACGATTT CGGAACCGGC TTCTCTTCAT TCGGCCGTTT GCAGCGGCTG
GAGGTCGATC GGATCAAGAT CGACCGGTCT TTCGTTCATG CCTTCGACCG GCCAGGTGGT
GGCGTCGCGG TCGTCCAGTC CATCGTAGGC GTAGCACATG CCAAAGGCCT GCGCATCACG
GCAGAAGGGG TGGAAACGGA AGAGCAGAGC GAGATACTCC GAAACCTCGG CTGTGACGAA
CTGCAGGGTT TCCACCTCTC CAAGCCGGTG CCAAAGAGTT CCCTCCGCCA GCTTCTTGGC
GCAGAAACGG CTAAAAGGAC CTCTTCCTAA
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| Protein sequence | MSFVSGRVAV FRWLMPLAIA MALIGGIYLA VRWSAHQSDA VAIERQQQLV ELVISKMQGS
IAHDQESVTV WDDAVRKVSL EWDAGWVDSN LGSWMHSYFR HDGAFVISPD RKPVFAYLDG
RTDDGGIFRN IAPAAMPLVA KLQERLAAGD EAGTSDQVLS IGESDLVRIE GRPAIVSAKP
IVSDTGDIVQ EPGREFLHLA IRFLDDDFLT GLGADYGFED LRFSVSPDLG RNRSYAPIVR
SSGEPIGYFS WLPFRPGAAV MKATAPVLLI SGLLLFTLTS GLSVVLRRRS RRLQESQAEL
NHLARHDPLT GLANRASFNQ SLAQAVASSA ADQANALLYL DLDRFKQVND TLGHPVGDRL
MVAVAKRLME TASAGVISRI GGDEFTIVVE RTRQEEVEKL CDSLIAAIRQ PFEIDGQPIL
IGLSIGVAVA TGNDADPVEI TRKADIALYH AKSAGRNRYA VFGPHMDELI RTKRDLEQDL
RAALHAGNQL EVFYQPVYSA QSREISSLEA LVRWRHPSKG AIAPDVFVPL AETAGLIDRL
GAFVLKEACS TAREFPSLDI AVNVSAIELG QRHYAAQVFS LLRQFSVEPW RLELEITETA
LLDEAGVCEK NITALRDFGV KFALDDFGTG FSSFGRLQRL EVDRIKIDRS FVHAFDRPGG
GVAVVQSIVG VAHAKGLRIT AEGVETEEQS EILRNLGCDE LQGFHLSKPV PKSSLRQLLG
AETAKRTSS
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