Gene Smed_5143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5143 
Symbol 
ID5319445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp95734 
End bp96276 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content62% 
IMG OID640776921 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001313853 
Protein GI150377258 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.387385 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAATG CGGTGAAGGA TATCGGTGAA CGCCTCATGG CGTTCCTGCC CAATCTGCGC 
CGCTTCGCCA TCTCGCTCTG CGGCTCGCGT GATGTGGCCG ATGATCTTGT GCAGGCAGCT
TGCGAGCGGG CACTTGCGAG TGCCGAGCGC TTCGAGCCGG GTACGCGTTT CGACGCGTGG
ATGTTCCGGA TTCTACGCAA CCTTTGGGTC GATCAGGTGC GCCGGCAGAG GACCGCAGGC
GTGCAGGACG ATATTTCCGA ACGCCATGAC ATTGCCGGTT CATCCGGCGA GCGGGAGGCC
GAAGCGCGGC TGACCCTCAA GACCGTTGCG GAGGCGATCA CCGAATTGCC GCAAGAGCAG
CGGGAGGTGC TGCTTCTGGT CTGCGTCGAG GAGCTATCCT ACCGCGAAGC CGCCGAAGTA
ATGGGCATTC CGATCGGAAC GGTGATGAGC CGCCTGGCCA GAGCGCGGAA AAGTTTGGCC
GAGGCCGCCG GAATAACGAT GACCGCCGCA CGTTCGCATG TGATGAAGGG CGTAAAAGAA
TGA
 
Protein sequence
MSNAVKDIGE RLMAFLPNLR RFAISLCGSR DVADDLVQAA CERALASAER FEPGTRFDAW 
MFRILRNLWV DQVRRQRTAG VQDDISERHD IAGSSGEREA EARLTLKTVA EAITELPQEQ
REVLLLVCVE ELSYREAAEV MGIPIGTVMS RLARARKSLA EAAGITMTAA RSHVMKGVKE