| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5136 |
|---|
| Symbol | |
|---|
| ID | 5319438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 88695 |
|---|
| End bp | 90011 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640776914 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001313846 |
|---|
| Protein GI | 150377251 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.711576 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCCGA CCGTCTCTGG ACTGATGATC GTCGCCTGCC TTTTCGTGTT GCTGGCAACG
GGAATGCCCA TCGCTTTTGC CTTGGGGCTT GCCGCCTTCG CAGCGCTCTA CATGCAAAGC
GGCGCCGGCA TTTTCTATGT GCTTGGCGAT ACCATGTTTT CCGGCATCGC CAATCTGGCC
TATGTGTCGA TCCCGATGTT CGTCCTTATG GGCGCGGCGG TCGCCTCTTC TCCGGCGGGA
TCCGATCTCT ACACCTCGCT CGACCGGTGG CTGAACCGCA TTCCGGGCGG GCTCATTCTG
TCCAATATTG GGGCCTGCGC CATCTTCTCC GGCATGACGG GCTCTTCACC CGCGACCTGC
GCGGCGATCG GCAAGATGGG TATCCCGGAA ATGATGCGGC GCGGCTATCC CCCATCGGTC
GCGAGCGGCT CGATCGCCGC GGGCGGCACG CTGGGCATAC TCATTCCCCC CTCAGTGACG
CTGATCGTCT ACGGAATAGC GACCGAGACC TCCATCGGGC GGCTGTTCAT GGCGGGCATC
CTGCCCGGCA TCATGCTGAC GATCATGTTC ATGGCCTGGG CGGTCATCGA CTGCAAGCGC
AAGGGCTACG AGTTCGATGC ACGCCTCGTT CGCTACTCGA TGAAGGAACG CCTGTCCGGT
CTTCCGCGCA TCCTGCCGTT CCTGCTGATC ATTGCCGGCA CGCTCTACGT GCTTTACGGC
GGGATTGCCA CGCCGTCGGA AGCAGCCGGT GCGGGTGCTT TCCTGACACT AGTCGTGGTG
ATCGTCGCCT ATCGCCTGTT CCGCTTTCGG CCCGTCGCCG GCATTTTTGG ATCGGCGATG
AAGGAAAGCG TCATGATCAT GATGATCATG GCGGCCGCAG AGCTCTTTGC CTTCGCGCTG
TCCTCGCTGT TCATCACGCA AACGGTTGCG GCGGCGATTG CCGACATGGA GGTCAATCGC
TGGGTGCTGA TGGCGATCAT CAACGTCTTT CTTCTGGTCT GCGGCATGTT CCTGCCGCCC
GTCGCCGTCA TCGTGATGAC TTCACCGATG CTCTTCCCGA TCGTCACCCA GGCCGGTTTC
GATCCCTACT GGTTCGCGAT CGTACTGACG ATCAACATGG AGGTCGGACT GATCACGCCT
CCGGTCGGCC TTAATCTGTT CGTCATCAAT GCCATCGCGC CGCAGATCCC GACGAAGGAG
ATCCTCTGGG GCTCGCTGCC CTACGTGCTC GTCATGTTCC TGGCGATCGT TCTCCTCTGC
ATCTTTCCAG ACATTGCGAC GTGGCTGCCG AACCAGATGC TGGGGACGGT TCAATGA
|
|---|
| Protein sequence | MSPTVSGLMI VACLFVLLAT GMPIAFALGL AAFAALYMQS GAGIFYVLGD TMFSGIANLA
YVSIPMFVLM GAAVASSPAG SDLYTSLDRW LNRIPGGLIL SNIGACAIFS GMTGSSPATC
AAIGKMGIPE MMRRGYPPSV ASGSIAAGGT LGILIPPSVT LIVYGIATET SIGRLFMAGI
LPGIMLTIMF MAWAVIDCKR KGYEFDARLV RYSMKERLSG LPRILPFLLI IAGTLYVLYG
GIATPSEAAG AGAFLTLVVV IVAYRLFRFR PVAGIFGSAM KESVMIMMIM AAAELFAFAL
SSLFITQTVA AAIADMEVNR WVLMAIINVF LLVCGMFLPP VAVIVMTSPM LFPIVTQAGF
DPYWFAIVLT INMEVGLITP PVGLNLFVIN AIAPQIPTKE ILWGSLPYVL VMFLAIVLLC
IFPDIATWLP NQMLGTVQ
|
|---|
| |