| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5132 |
|---|
| Symbol | |
|---|
| ID | 5319434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 84619 |
|---|
| End bp | 86019 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640776910 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_001313842 |
|---|
| Protein GI | 150377247 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.179001 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGGT CGAGAGGCTC TCTTTTTGCG TTCTTTTGCC TCGTATTGGC TGTGTTTATG
GGTATTGGCG TCGGTTCGAG CGCATCGGCA AACGGCGATT CCGTTGAAAT CTCTTCCAAT
TTTTCGCGGT CGATCAGGGT CGCGAAGGGC AAGACGGTAA CGATCCGAGC CGTGCAGCGA
TTCGATGAGA TCGTCATCGG AGATCCCGAA ATCGCGACCG TAACGCCGCT GACCGATCGC
TCCTTCTATA TTCTCGGCAA TGAACTGGGT TCGACGAGCG TCACCATTTT CGATGCGGAA
AAGAATCCCG TCGGCATAAT CGACATAGAG GTGACGCTCG ACACGAAGTT GCTGTCGTCG
ACGATCCGGC AGTCGGTGCC CGGCTCGAAC GTAAAGGTAA CTTCGGCAAA TGGAAGGATC
GTTCTTTCCG GCTCTGCCAC GGACGCAGTT GCGGCCACGC AGGCCGAGCA GATCGCATCG
CGTTTTGCCG GTGACGAGGA GATCATCAAT TCCGTCAAGA TCACCTCGTC TCAACAGGTC
CAGCTGAATG TCAGATTCGT GGAGATCAAC CGCGACGTCG GCAAGGAGCT CGGGACCCGG
ATCAGTGCCG CTTATGCCTG GTCGAACGGG AGCGTCGAGT TCAACTCCCG CCCGCGAGCG
ACGTCCAATA CGCCGGCGGG GTCCCTCATC GGCAGCCTTA TTGGAGAGGG CTACTCCGTC
GACGTGGCCA TTGATGCGCT CGAAGACCGG GGCATGGCCA GGCGTCTGGC CGAACCTAAT
CTAATAGCGC GTTCCGGGGA GACATCGAGC TTTCTAGCGG GTGGGGAATT CCCCATTCCA
GTTTCCGAAG ATGACGGACA GATTGCCGTC AGCTACAAAA AGTTCGGAGT CGGTCTGGAT
TTTACGCCGA CCGTACTCAG CGACGGCCTC ATTGCCCTCG ACATCGAGCC GGAAGTGTCG
GCGATCGACA ACACAGCGTC CTATCGCGTG CGCAATATTT CGATTCCGGG TTTCTCCGTT
CGTCGAGCAC GGACATCGGT CGATCTCAAG AGTGGCCAGA GCTTCATGAT TGCCGGTCTG
TTGCAAAGCG AGAACAATCT GATCACCCAG CGTGTGCCGG GGCTTGGCCA ACTTCCAATT
CTGGGGGCGT TGTTTTCCTC CAAGGCCTAC CAGCGGCGCG AAACCGATCT CGTGATCATC
GTCACGCCTC ATCTCGTCAA ACCGATGGAT CCGCTGAAGA AAGTCGCCAG CCCCTCGGAT
CGTACGAAGC GGCCGACCGA AGCGGAATTC TTCCTCGGCA ATATCGATGA AGTAAACGCC
GACGACAGGA CCCGAACAGC GTCGACACAG GCGCGCGCCG TCCGCGCACC GAGCTCGGGC
CATTTTCTGG AGCTCCAATG A
|
|---|
| Protein sequence | MTRSRGSLFA FFCLVLAVFM GIGVGSSASA NGDSVEISSN FSRSIRVAKG KTVTIRAVQR
FDEIVIGDPE IATVTPLTDR SFYILGNELG STSVTIFDAE KNPVGIIDIE VTLDTKLLSS
TIRQSVPGSN VKVTSANGRI VLSGSATDAV AATQAEQIAS RFAGDEEIIN SVKITSSQQV
QLNVRFVEIN RDVGKELGTR ISAAYAWSNG SVEFNSRPRA TSNTPAGSLI GSLIGEGYSV
DVAIDALEDR GMARRLAEPN LIARSGETSS FLAGGEFPIP VSEDDGQIAV SYKKFGVGLD
FTPTVLSDGL IALDIEPEVS AIDNTASYRV RNISIPGFSV RRARTSVDLK SGQSFMIAGL
LQSENNLITQ RVPGLGQLPI LGALFSSKAY QRRETDLVII VTPHLVKPMD PLKKVASPSD
RTKRPTEAEF FLGNIDEVNA DDRTRTASTQ ARAVRAPSSG HFLELQ
|
|---|
| |