Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5127 |
Symbol | |
ID | 5319429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 81081 |
End bp | 81593 |
Gene Length | 513 bp |
Protein Length | 170 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640776905 |
Product | peptidase A24A prepilin type IV |
Protein accession | YP_001313837 |
Protein GI | 150377242 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0993185 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCTCGA CATCCGCAGC GTGGCTTGCG TTTTTCCTCT TCGCCGGAGT GATGACTTAC GCCGGCATCA GGGACGTGGC GACGATGACC ATATCCAATC GCCTGGTGGT CTTCCTGGTG ATTGCCTTCG CCGTTCTTGC GCCCGCTGTC GGTCTGTCTT TCGACACGAT CACGTCGAGC ATTGTCGTTG CCTCCGTCGT GCTCGCTTGC ACTTTCGTGC TCTTTGCTGC CGGCTGGATC GGCGGCGGCG ACGCAAAACT CCTGCCTGTC GCCGTGCTCT GGCTCGGCGC CGACCTCGCC CTCCCTTTCG TTCTCTACAC GTCGGTTATC GGCGCGGCCC TGACGCTTGG ACTTCTCCAG CTGCGGCGGG CCCCTCTGCC GCTCGTCCTG AAGAAGAATG CCTGGTCGAA GCGTCTGCTC GACCGCGAGA CCGGCATTCC CTATGGCGCG GCGATGGCGC CGGCTGCCCT TCTGCTGCTG CCCGAAAGCC ACTGGTGCTC CGCCTTCCTT TGA
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Protein sequence | MISTSAAWLA FFLFAGVMTY AGIRDVATMT ISNRLVVFLV IAFAVLAPAV GLSFDTITSS IVVASVVLAC TFVLFAAGWI GGGDAKLLPV AVLWLGADLA LPFVLYTSVI GAALTLGLLQ LRRAPLPLVL KKNAWSKRLL DRETGIPYGA AMAPAALLLL PESHWCSAFL
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