Gene Smed_5127 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5127 
Symbol 
ID5319429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp81081 
End bp81593 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content63% 
IMG OID640776905 
Productpeptidase A24A prepilin type IV 
Protein accessionYP_001313837 
Protein GI150377242 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4960] Flp pilus assembly protein, protease CpaA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0993185 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCTCGA CATCCGCAGC GTGGCTTGCG TTTTTCCTCT TCGCCGGAGT GATGACTTAC 
GCCGGCATCA GGGACGTGGC GACGATGACC ATATCCAATC GCCTGGTGGT CTTCCTGGTG
ATTGCCTTCG CCGTTCTTGC GCCCGCTGTC GGTCTGTCTT TCGACACGAT CACGTCGAGC
ATTGTCGTTG CCTCCGTCGT GCTCGCTTGC ACTTTCGTGC TCTTTGCTGC CGGCTGGATC
GGCGGCGGCG ACGCAAAACT CCTGCCTGTC GCCGTGCTCT GGCTCGGCGC CGACCTCGCC
CTCCCTTTCG TTCTCTACAC GTCGGTTATC GGCGCGGCCC TGACGCTTGG ACTTCTCCAG
CTGCGGCGGG CCCCTCTGCC GCTCGTCCTG AAGAAGAATG CCTGGTCGAA GCGTCTGCTC
GACCGCGAGA CCGGCATTCC CTATGGCGCG GCGATGGCGC CGGCTGCCCT TCTGCTGCTG
CCCGAAAGCC ACTGGTGCTC CGCCTTCCTT TGA
 
Protein sequence
MISTSAAWLA FFLFAGVMTY AGIRDVATMT ISNRLVVFLV IAFAVLAPAV GLSFDTITSS 
IVVASVVLAC TFVLFAAGWI GGGDAKLLPV AVLWLGADLA LPFVLYTSVI GAALTLGLLQ
LRRAPLPLVL KKNAWSKRLL DRETGIPYGA AMAPAALLLL PESHWCSAFL