| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5126 |
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| Symbol | |
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| ID | 5319428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 80245 |
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| End bp | 81036 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640776904 |
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| Product | SAF domain-containing protein |
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| Protein accession | YP_001313836 |
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| Protein GI | 150377241 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0670857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGCA TCGTCATACT CCTGCTCGCA CTGGCATCCG GTGGAGCCGC CTCCTGGCTG
GCGCTCGGCA TGGGCGACGA GCCTTCGGTC GAGGTGGCCG AGGTTGAAGA AGCGCCGGCG
CAGGAGGTGC TCGTCGCCGC TGCGGAGCTC AAGCGCGGCG CGGCGATCGA AGAAAACCAC
CTGCGCTGGC AACCATGGGA AGGCGAAATT CCTCCCGTCT TCATCAGTCG CAGCTCCCGA
GCGGATGCGA CCACAGAGCT CAAGGGTTCG CTTGCCCTGA GTGATTTCGT GGCGGGAGAA
CCCATTCGCG AGGACAAGCT CGCACAACGT GGTACGGGTT ACCTCTCGAG CTTGTTGCCC
TCGGGAAAGC GGGCGATTGC CGTTCGCGTC ACGGCGGAAA GCACGGCCGG CGGCTTCATC
CTGCCGAACG ATCATGTCGA TGTCGTTCAC ACAGCCGTCC GGCCCGACGC CGCGGGCGAC
GCCGGCAAGG TCGTCAGTCG CGCGATTCTG TCCAACATTC GGGTGCTTGC AGTGGATCAG
ACCGTTTCGC AGGCGGCCGA TGGAACATCG GTCATCGGCA AGACCGCGAC GCTCGAGGTG
AATCCCGAAC AGATCGCAGC CGTCGCGGCG GCGGAAGCCT CCGGCACGGT TTCGCTCGCA
CTCCGTGCGA TCAGCGACAA TCACGAAGCT TCAGTCGTCG AAGCCGAGGG AACCCGACGC
GGCGTGGTCC GCTTTTTCAA CGGCGGACGC ATGTCGATGG TGGAGGTTCC CTCCCGTGCC
GACGGCAGCT GA
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| Protein sequence | MIRIVILLLA LASGGAASWL ALGMGDEPSV EVAEVEEAPA QEVLVAAAEL KRGAAIEENH
LRWQPWEGEI PPVFISRSSR ADATTELKGS LALSDFVAGE PIREDKLAQR GTGYLSSLLP
SGKRAIAVRV TAESTAGGFI LPNDHVDVVH TAVRPDAAGD AGKVVSRAIL SNIRVLAVDQ
TVSQAADGTS VIGKTATLEV NPEQIAAVAA AEASGTVSLA LRAISDNHEA SVVEAEGTRR
GVVRFFNGGR MSMVEVPSRA DGS
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