Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5126 |
Symbol | |
ID | 5319428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 80245 |
End bp | 81036 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640776904 |
Product | SAF domain-containing protein |
Protein accession | YP_001313836 |
Protein GI | 150377241 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3745] Flp pilus assembly protein CpaB |
TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0670857 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGCA TCGTCATACT CCTGCTCGCA CTGGCATCCG GTGGAGCCGC CTCCTGGCTG GCGCTCGGCA TGGGCGACGA GCCTTCGGTC GAGGTGGCCG AGGTTGAAGA AGCGCCGGCG CAGGAGGTGC TCGTCGCCGC TGCGGAGCTC AAGCGCGGCG CGGCGATCGA AGAAAACCAC CTGCGCTGGC AACCATGGGA AGGCGAAATT CCTCCCGTCT TCATCAGTCG CAGCTCCCGA GCGGATGCGA CCACAGAGCT CAAGGGTTCG CTTGCCCTGA GTGATTTCGT GGCGGGAGAA CCCATTCGCG AGGACAAGCT CGCACAACGT GGTACGGGTT ACCTCTCGAG CTTGTTGCCC TCGGGAAAGC GGGCGATTGC CGTTCGCGTC ACGGCGGAAA GCACGGCCGG CGGCTTCATC CTGCCGAACG ATCATGTCGA TGTCGTTCAC ACAGCCGTCC GGCCCGACGC CGCGGGCGAC GCCGGCAAGG TCGTCAGTCG CGCGATTCTG TCCAACATTC GGGTGCTTGC AGTGGATCAG ACCGTTTCGC AGGCGGCCGA TGGAACATCG GTCATCGGCA AGACCGCGAC GCTCGAGGTG AATCCCGAAC AGATCGCAGC CGTCGCGGCG GCGGAAGCCT CCGGCACGGT TTCGCTCGCA CTCCGTGCGA TCAGCGACAA TCACGAAGCT TCAGTCGTCG AAGCCGAGGG AACCCGACGC GGCGTGGTCC GCTTTTTCAA CGGCGGACGC ATGTCGATGG TGGAGGTTCC CTCCCGTGCC GACGGCAGCT GA
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Protein sequence | MIRIVILLLA LASGGAASWL ALGMGDEPSV EVAEVEEAPA QEVLVAAAEL KRGAAIEENH LRWQPWEGEI PPVFISRSSR ADATTELKGS LALSDFVAGE PIREDKLAQR GTGYLSSLLP SGKRAIAVRV TAESTAGGFI LPNDHVDVVH TAVRPDAAGD AGKVVSRAIL SNIRVLAVDQ TVSQAADGTS VIGKTATLEV NPEQIAAVAA AEASGTVSLA LRAISDNHEA SVVEAEGTRR GVVRFFNGGR MSMVEVPSRA DGS
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