Gene Smed_5123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5123 
Symbol 
ID5319425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp77596 
End bp77763 
Gene Length168 bp 
Protein Length55 aa 
Translation table11 
GC content58% 
IMG OID640776901 
ProductFlp/Fap pilin component 
Protein accessionYP_001313833 
Protein GI150377238 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3847] Flp pilus assembly protein, pilin Flp 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0326494 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATC TTCTCGTCCG TTTTGCTCGC AATGAATCCG GCGCCACCGC CATTGAATAC 
GGCCTGATCG CCGGCCTGAT TTCTGTCGTG ATCATTGCCG TGATGGCGAC CGTCGGCACC
GGCCTGACCA CCAGATTCAC GGCTATCGGA ACGGCTCTCA CCGGCTGA
 
Protein sequence
MKNLLVRFAR NESGATAIEY GLIAGLISVV IIAVMATVGT GLTTRFTAIG TALTG