Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5122 |
Symbol | |
ID | 5319424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 76062 |
End bp | 77495 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640776900 |
Product | type II secretion system protein E |
Protein accession | YP_001313832 |
Protein GI | 150377237 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0451051 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGTTCG GCAAGAAATC CATTTCGGAA AAACAGATAT CCGAGGCAGC GGTCCAGTCC GTGATCGAAA ATGAACCGCA GGCCGCGCCT GCCCTTGTCC AGGTTCTAAA GCCAACCCAG GTTGCCGCAA CGGCGAGATT TGACAAGGCC GAACAGTATT ACAGCCTGAA GAAGGAAATC TTCAGCGCCC TCATCGCTAC GATCGATGTC GCTGCACTCT CCAATATGGA CGTGGAGCAG GCGCGCGGGG AGATCGGCGC AATTATCAAC GACATCGTTG CCGCCAAGAA GGCCGGCATT TCGATGGCGG AGCAGAACAA CCTTCTCAGC GACATCTGCA ACGACATTCT GGGCTATGGG CCGCTCGAGC CGCTGCTTGC TCGCGACGAC ATAGCCGACA TCATGGTCAA TGGCGCAAAC CAGGTCTTCA TCGAGGTCAA TGGCCGAGTG CAGGAGACGG GGGTTCGTTT TCGCGACAAC GAACAGCTCC TCAACATCTG CCAGCGCATC GTTAGCCAGG TTGGCCGCCG CGTCGATGAA TCAAGCCCGA TCTGCGACGC GCGTCTTGCC GATGGCTCCC GTGTGAACGT GATCGCGCCT CCCCTGGCAA TCGATGGCCC CACCCTGACG ATCCGCAAGT TCAAGAAGGA AAAGCTGACA CTCGACCAGC TGGTTCGATT CGGCTCGATT TCGCAGGAAG GCGCTGAGGT TCTCAAGATC ATTGGTCGCG TGCGCTGCAA TGTCCTTATT TCCGGCGGTA CGGGCTCCGG CAAGACCACG CTTCTGAACT GCCTGACCGG CTATATCGAT CACGGAGAGC GCGTCATCAC CTGCGAGGAC GCGGCGGAGC TTCAATTGCA GCAGCCGCAT GTGGTTCGTC TCGAAACTCG GCCGCCGAAC ATCGAGGGGC AGGGCGAGAT CACCATGCGC AGCCTGGTGA AGAACTGCCT GCGTATGCGG CCCGAGCGGA TCATCGTCGG CGAGGTGCGC GGACCCGAGG CCTTCGATCT ATTGCAGGCG ATGAACACCG GCCACGACGG CTCGATGGGA ACGCTGCACG CAAACTCCCC GCGCGAAGCA ATGGCTCGCG TCGAGGCGAT GATCACCATG GGCGGCAGTT CGCTGCCGGC CAGGACGATC CGGGAGATGC TCGTCTCATC GGTCGACGTC ATCGTGCAGG CGGCCCGTCT TCGCGACGGT TCGCGCCGGA TCACCCATAT CACCGAAGTG CTCGGCATGG AGGGGGACGT GATCACGACA CAGGACCTCT TCATCTACGA CATCCTTGGC GAAGACGAGA AGGGGAACAT CATTGGAAGA CATCGTTCGA CCGGCATTGG TCGCCCGGCA TTCTGGGACC GCGCCCGTTA TTACGGCGAA GAGGGCCGCC TTGCCGCGGC CCTCGATGCG GCCGAGATGA AGGCGGCCGC TTGA
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Protein sequence | MMFGKKSISE KQISEAAVQS VIENEPQAAP ALVQVLKPTQ VAATARFDKA EQYYSLKKEI FSALIATIDV AALSNMDVEQ ARGEIGAIIN DIVAAKKAGI SMAEQNNLLS DICNDILGYG PLEPLLARDD IADIMVNGAN QVFIEVNGRV QETGVRFRDN EQLLNICQRI VSQVGRRVDE SSPICDARLA DGSRVNVIAP PLAIDGPTLT IRKFKKEKLT LDQLVRFGSI SQEGAEVLKI IGRVRCNVLI SGGTGSGKTT LLNCLTGYID HGERVITCED AAELQLQQPH VVRLETRPPN IEGQGEITMR SLVKNCLRMR PERIIVGEVR GPEAFDLLQA MNTGHDGSMG TLHANSPREA MARVEAMITM GGSSLPARTI REMLVSSVDV IVQAARLRDG SRRITHITEV LGMEGDVITT QDLFIYDILG EDEKGNIIGR HRSTGIGRPA FWDRARYYGE EGRLAAALDA AEMKAAA
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