| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5121 |
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| Symbol | |
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| ID | 5319423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 75035 |
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| End bp | 76033 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776899 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001313831 |
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| Protein GI | 150377236 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0725578 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACCT CTTTGCTTTT TCCTGTTTTC GTATTTCTCC TGGCTTCCAC CAGCATCGGC
GGCGTGATGG TGGCGGCGTT CTATCCGCGT GTCTCCAAGG CAAGCGCCTA TCGCCAGAGG
CTCGCGCGCA TGTCGGCACC GGCGGAAAAT AAGCGAAGCG AGCCTACGGA GCCTGATGGC
CGCGACCGCC GTCGCTCGGT TGAAAAGACG TTGCGCGAGA TAGAGGAAAA GCGCCAGGCG
AATGCGCGCA AAGGAAAGAC GACGCTGACG GCCAGACTCC GTCAGTCCGG CCTCCATTGG
TCCCCCAAGA CCTATTTCGT GGTCTGTGCC TGCGCCGCAT TGGCCAGCTG GTGCGCGATG
CTGCTGCTGG ATACGGGCGC GCTGGTGTCG GCAGGATTCG CCATTTCAGG CGGGCTGCTT
CTGCCGCACG TCTATGTGAA CATCAAGCGC AATGCCCGCT TTGCCAAGTT CACTGCCGAA
TTCCCGAATG CCGTCGACGT GATCGTCAGG GGGCTCAAGG CAGGTCTGCC GATGCCGGAC
TGCCTGAGGG TGATCGCCAC CGAAGCGCAG GAGCCGGTCA AAGGCGAGTT CCTCGCGATC
GTCCAGGACC AGACGCTGGG TATCCCCGTG GACGAGGCCG TGAAACGCAT GAGCGAACGC
ATGCCGCTGG CCGAAGCGCA TTTCTTTGCC ATCGTCATCG CCATTCAGAG CCGCACCGGC
GGCAGCCTTT CGGAAGCGCT GGGGAACCTT TCCAAGGTCC TGCGCGAGCG GAAGAAGATG
AAAGCCAAGA TCAAGGCGAT GAGCTCGGAA GCGAAATCCT CCGCAGGCAT CATCGGTGCT
TTGCCGTTCC TCGTCGCGGG TGCCGTTTAC TTCGCGAGCC CGGACTACAT GGCACTCCTG
TTCGCGACCG TGACGGGCAA GATCGTCCTT GTCGGCTGCG GCCTGTGGAT GGGCATCGGT
ATCCTCGTCA TGCGCAAAAT GATCAACTTC GACTTCTGA
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| Protein sequence | MATSLLFPVF VFLLASTSIG GVMVAAFYPR VSKASAYRQR LARMSAPAEN KRSEPTEPDG
RDRRRSVEKT LREIEEKRQA NARKGKTTLT ARLRQSGLHW SPKTYFVVCA CAALASWCAM
LLLDTGALVS AGFAISGGLL LPHVYVNIKR NARFAKFTAE FPNAVDVIVR GLKAGLPMPD
CLRVIATEAQ EPVKGEFLAI VQDQTLGIPV DEAVKRMSER MPLAEAHFFA IVIAIQSRTG
GSLSEALGNL SKVLRERKKM KAKIKAMSSE AKSSAGIIGA LPFLVAGAVY FASPDYMALL
FATVTGKIVL VGCGLWMGIG ILVMRKMINF DF
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