| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5109 |
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| Symbol | |
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| ID | 5319411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009621 |
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| Strand | - |
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| Start bp | 56192 |
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| End bp | 57184 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640776887 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001313819 |
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| Protein GI | 150377224 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0905505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0237076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGGATA CGCAGGAGAT CCGCTTTGCG GTTCTGATGT TTTCGAACTT TCCGCTGATG
GCTTTCAGTT CGGTCATCGA ACCGCTGCGC GCGGCCAACA CGCTCTCCGG CAGGCGCTGC
TATTCCTGGG TCACGGTCGC CGCCGGCGAG AAGGTCACGG CCTCGAACGG CATCCGCATC
GAGCCCGATT TTGCTGTGCG CAACGCACCC GAGGTCGACC GCATCGTCGT GTGTTCGGGC
GGCGACGCCG AGCATCTCGT GGCGGACGAC GAAATGGCTT GGATCCGCAA GAACCTTCGC
TCCGGTGCGC AACTCGGCGC CGTGGCCGAT GCGGCCTTCT TCCTTGCCCG CAAGGGCCTT
CTCGACGGAC ATGCATGCAC GCTTCACTGG ACCAGTCAGC CGGCGTTCAA GGAAGCGTTT
CCGCATCTCG ACATGCGCTC GGACCTCTAT GTGGTCGATC GCCGCCGCTT CACCTCGGTC
GGCGGCGTCG GCAGCCTCGA CATGATGCTG GATATGATCG GACGGGATTA TGGCGCCGAG
CTCGCCGACG CTGTCGCGGG TTGGTACATG CACAGTCCTT TGCGGCCGAA TGCCGACAGG
CAAAAGCTGA CCTTACGTAT CCGAAGCGGT ATCGTCGACG ACCTCGTCCT TTCCGCAGTG
GCGATGATGG AGGATGCCAT CGAGGACGTG CTGCGGATCG AGGATCTGGC CGCCCGGCTG
AACGTCTCTT CCGACAAACT CGAGCGCGCC TTCAAAGCCG CGCTGGGTGT GTCGCCCAAC
AGCTATTATC GCAGTCTGAG GCTTGGTCAT GCCGCAGACA TGTTGACGCA TTCCAATCTC
AAGGTGAACG AAGTCGCCGT CGCCTGTGGG TTCGCGAACG CCGCGAACTT CTCCCGTGCC
TTCAAGGAGC AGTTCGGATA CGTGCCGCAT AGCATCCGCC GCCGTATCTC GCGGGCCGGC
GAGGCGCCGC GCGCGGTTGC GGGGCTGAAA TAA
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| Protein sequence | MRDTQEIRFA VLMFSNFPLM AFSSVIEPLR AANTLSGRRC YSWVTVAAGE KVTASNGIRI
EPDFAVRNAP EVDRIVVCSG GDAEHLVADD EMAWIRKNLR SGAQLGAVAD AAFFLARKGL
LDGHACTLHW TSQPAFKEAF PHLDMRSDLY VVDRRRFTSV GGVGSLDMML DMIGRDYGAE
LADAVAGWYM HSPLRPNADR QKLTLRIRSG IVDDLVLSAV AMMEDAIEDV LRIEDLAARL
NVSSDKLERA FKAALGVSPN SYYRSLRLGH AADMLTHSNL KVNEVAVACG FANAANFSRA
FKEQFGYVPH SIRRRISRAG EAPRAVAGLK
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