| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5105 |
|---|
| Symbol | |
|---|
| ID | 5319407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 52317 |
|---|
| End bp | 53432 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776883 |
|---|
| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001313815 |
|---|
| Protein GI | 150377220 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1125] ABC-type proline/glycine betaine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.116998 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGGC TCGAGAATCT GACGAAGCAT TACGGTCCGG CGCATGATCC TCTCATTGCC
GTCGACAATG TAAGCCTTGA CTTACCGACT GGCGAAATCT GCGTCTTGCT CGGGCCGTCG
GGCTGCGGCA AGACGACGAC GATGAAGATG ATCAACCGGC TGATCCAGCC CACCGGCGGC
AAGGTCTTCA TCAACGGCAA GGACACGAGC ACAGTCGATC CGATCGAGCT CAGGCGGTCC
ATCGGCTACG TGATCCAGCA GATCGGCCTC TTTCCGAACA AGACGATCGA GGAAAACATC
TGCGTCGTGC CGGACCTGCT CGGCTGGGAC CGCCGCAAAT CTCGCGACCG TGCTAAAGAG
CTCCTGGAGC TTGTGGGGCT TCAACCCGAC CTTTTCCTCA AGCGCTATCC GAAGGAACTT
TCAGGCGGCC AGCAGCAGCG CGTCGGCGTT CTGCGCGCGC TGGCGGCCGA TCCGCCGGTC
ATGCTGATGG ACGAGCCGTT CGGGGCAATC GATCCCATCA ACCGCGAGGT CATCCAGGAG
GAATTCCTGA AGATGCAGCG GGAGATCCGG AAGACCATCA TCTTCGTCTC GCACGACCTC
GACGAAGCGG TGAAGATGGC GGACAAGATC GCAATCTTCC GCAGCGGAAA ACTCGAACAA
TATGCTGCCC CCGACGACCT GCTCGCGCGC CCCGCCAACA GCTTCATCGA AGATTTCCTT
GGCTCGGACC GGGCACTCAA GCGGCTGAGG CTCGTCTCGG TGGGCGATGC CATGGAGACG
GATTTCATAA CGGTCCTGGA GACGGATTCG GTCGAGCATG CGCGTGCGCG CATACGGTCG
TCGCGCAGCG CCGCCGCCTT TGTGCTGGAC GCCGAAGGCG CACCCCGCTC CGTCCTGAGC
GAGCAGGTGG CGGAGGCGTG CTCCGGCACC GTGGGAGACC ATGCGGAACC GGTAAAGTCC
ACCGTGCCGC TCACCGGCGA TCTCCGGCAA GCGGTGTCGG TGATGTTCGC TCACGACATG
CCGTTGCTGC CCTGCATCGA CGAGGCCGGG CGATTGGCGG GTGTGATGAG CTACCGCTCG
ATCGTGCACC ATCTCGGCCA TGGAGGGAAG GCATGA
|
|---|
| Protein sequence | MIRLENLTKH YGPAHDPLIA VDNVSLDLPT GEICVLLGPS GCGKTTTMKM INRLIQPTGG
KVFINGKDTS TVDPIELRRS IGYVIQQIGL FPNKTIEENI CVVPDLLGWD RRKSRDRAKE
LLELVGLQPD LFLKRYPKEL SGGQQQRVGV LRALAADPPV MLMDEPFGAI DPINREVIQE
EFLKMQREIR KTIIFVSHDL DEAVKMADKI AIFRSGKLEQ YAAPDDLLAR PANSFIEDFL
GSDRALKRLR LVSVGDAMET DFITVLETDS VEHARARIRS SRSAAAFVLD AEGAPRSVLS
EQVAEACSGT VGDHAEPVKS TVPLTGDLRQ AVSVMFAHDM PLLPCIDEAG RLAGVMSYRS
IVHHLGHGGK A
|
|---|
| |