| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5065 |
|---|
| Symbol | |
|---|
| ID | 5319367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 11416 |
|---|
| End bp | 12384 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640776845 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001313777 |
|---|
| Protein GI | 150377182 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCT CCGATTTCAC GGCGTCACTC ACGCCACCCA TCCCTGCCAC CACGAGCGCG
CCACGCAGCG CGATCTCGGA ACTCCTGCAC GACAAGGCCG CCGCCATCGG CCTTGCCTTC
ATCCTACTCA TTGTGTTCCT GGCCCTGTTC GCTCCCCTTG TCGCACCGTA CGATCCGGCC
GCGCAGTCGA TCATGGCCCG GCTGAAGCCG CCCGTCTGGA TGGCGCGCGG CACGTGGGAA
CACCTGCTCG GAACTGATAA TCTCGGCCGC GACGTCCTGT CCCGCATCAT CTGGGGCGCA
AGGGCGACGC TGACGATCGG CGCCGTCACC TGTCTTCTGG CGGCGACGCT CGGGACAGTC
GTCGGCCTAT GGGCCGGATT CATCGGTGGG CGCACGGATT CGGTCCTGAT GCGTCTGGTC
GACATCCAGG TCAGCTTCCC CGGAATCCTT CTCATCCTGC TCGTCGTCGC GGTTCTCGGG
CCCGGCGTCT GGACGCTTGT TGCGGTCCTG TCGGTGACGA ACTGGATGGT CTATGCCCGG
CTGGTGCGCG GCATTGTCTC GTCGACCCGT CAGACCCCTT ATGTCGAGGC CGCTGAAGTG
ATCGGCTGTC GCCCCGCACG GGTGATCTTC AGGCATATCC TGCCGAACAT CGTCTCTCCG
CTTTTGACGC TTGCGATCCT GGAGTTCACC AATATCGTGC TGGCGGAAGC GGCTGTGTCG
TTCCTCGGCT TCGGCGTTCA GCCACCGGCG ACCTCGTGGG GCCTCGACGT CGCCTCGGGA
CGCGATTACC TGTTCATCGC GTGGTGGCTC GTGACTTTTC CCGGCCTTGC GATCGTCGTG
ACAGTGCTGT CCATCAATCT TTTTGCCAAC TGGCTGAGGG TGACGACCGA TCCCGAGGAA
CGCGAGAAGC GTTTTGCGCG CGCCGAGACG GCGAAGCGGC GCCGCGCCCG GCGGAGGGTG
GGTGCATGA
|
|---|
| Protein sequence | MAASDFTASL TPPIPATTSA PRSAISELLH DKAAAIGLAF ILLIVFLALF APLVAPYDPA
AQSIMARLKP PVWMARGTWE HLLGTDNLGR DVLSRIIWGA RATLTIGAVT CLLAATLGTV
VGLWAGFIGG RTDSVLMRLV DIQVSFPGIL LILLVVAVLG PGVWTLVAVL SVTNWMVYAR
LVRGIVSSTR QTPYVEAAEV IGCRPARVIF RHILPNIVSP LLTLAILEFT NIVLAEAAVS
FLGFGVQPPA TSWGLDVASG RDYLFIAWWL VTFPGLAIVV TVLSINLFAN WLRVTTDPEE
REKRFARAET AKRRRARRRV GA
|
|---|
| |