| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5000 |
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| Symbol | |
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| ID | 5318649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 1515366 |
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| End bp | 1517090 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640776782 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_001313714 |
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| Protein GI | 150377118 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00410599 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGCTT ATAGTTGCTC GAAAACGCAT GCATTTTTTA TTCATTTTCA CCATTTTTTT
TGGCCGGAAA CGTCCCGGCT CCCGGAGGAA ATCATGGCTA CAATTACGTA TCATTTCCCA
GCAGGACTTT ACCCAAATCA ATACAACCCA CCGTTGAGTG GCGTCAGCGT TAACCCGTCC
TTTGGCGAGC TCGTGGACAT GAGCACGGGG AGTCGCTCAA CCACTACCAG CACTTCGGTG
CTTTATCGGC TCGACAACGG TCTCAAGATG AAGCTCGTGG GCACGGGGTT CAGTTTTGAC
GCGAGTGGCG ATGCCGTCGG AGGAACAATC ACATCGATTG AGGTTCTTCT GAACAACGGC
ACGGGATTGA TACAAACAAT TAGCGGGCTG AATATTTCGC TTGAACTTTT CCAAGACGCA
TCGGCCGCGT TCGATAGTTC TGGACTCGAG AGTTGGCTCG CGAGCGGCAA CGATACGATC
AACGGCTCCC TCGGTAATGA TGAAATCTGG GGGCGCCTTG GAAACGATGT CCTCAACGGC
AATGCGGGTA ATGACCTTGT CACAGGCGGC GGCGGTGCAG ACACCTACGA TGGAGGAGCC
GGTTTTGATA TTCTGAACTT CCAGGACGCT TATGACTCCC CGACAGCGAT AAGAGGCATC
AACCTCAACG CCACGGCCGG GACCGTCGTT GATCAGTTCG GTTTTTCGGA AACCTTCCAG
AATTTCGAGG AATTCAGAGG AACCCAGTTC TCGGACTCGA TGATGGGGTC CTCGGTCGAT
GAGACGTTTT TTGGGTTTGG CGGACGCGAC AATATCAATG GTGGTGCCGG CATCGACACC
GTTCGATACG ACCGCGATTT CCAGCGAGGC GCCACAAAGG GTGTGAGCAT CGATCTCAGT
ACCGGTATTG CGACCGACGG CTTTGGATCT CGAGATACTC TCACCAGCAT CGAGAATATC
CGAGCAACTG AATTCAAGGA TACAATCGTC GGCAGTTCGG CAGCCAACTT CCTCCGCACG
TTCGCGGGCA ATGATTCAAT CAATGGCGGT GGCGGCTCAG ACAACATGCG CGGCGGCATA
GGAAACGATA CGTATTTCGT AGACAACACC GGCGATATCG TTGACGAAGC CGCCGACTCG
GGCGCGGGTA CGGACACCGT TCAATCCACA GTCTCGTTCA ATCTCGGCAA CACCGCGGTC
GCCAAAGGTG GCGTGGAGAA CCTTGTGCTC CTTGGCACCG GGAACATAAA CGGCACCGGC
AATGCCTTGA ACAACACCCT GAGTGGCAAT ACCGGCAACA ACACTTTCAG CGGCTTTGCC
GGCAACGATA CAATTGACGG GGGCCTCGGC AACGACCTGA TCAATGGGGG CCTCGGCAAT
GACAGCCTGA CCGGCGGAGC CGGCTTAGAC ACATTTAATT TCAGCAACGC TCTGGATGCC
ACGAACAACG TCGACACGAT CAACGGGTTC GTTGTCGCGG ATGATACGAT CCGATTGGAA
AATGCGGTCT TTACGGGGAT CGTCGGTACC GGCACGTTGA CTGCGGCGCA GTTCGTAACG
AATACCACTG GCCTAGCTGC TGACGCCGAC GACCGAATTA TTTATGATAG CGACACCGGA
AGGCTGCTCT ACGACAGCGA TGGCGACGGA GCGGGCGGTT CTGTTCATTT CGCCACGGTC
GGCACGAACC TCGGCATGAC TGCGAGCGAT TTCTTTGTTG TGTAG
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| Protein sequence | MAAYSCSKTH AFFIHFHHFF WPETSRLPEE IMATITYHFP AGLYPNQYNP PLSGVSVNPS
FGELVDMSTG SRSTTTSTSV LYRLDNGLKM KLVGTGFSFD ASGDAVGGTI TSIEVLLNNG
TGLIQTISGL NISLELFQDA SAAFDSSGLE SWLASGNDTI NGSLGNDEIW GRLGNDVLNG
NAGNDLVTGG GGADTYDGGA GFDILNFQDA YDSPTAIRGI NLNATAGTVV DQFGFSETFQ
NFEEFRGTQF SDSMMGSSVD ETFFGFGGRD NINGGAGIDT VRYDRDFQRG ATKGVSIDLS
TGIATDGFGS RDTLTSIENI RATEFKDTIV GSSAANFLRT FAGNDSINGG GGSDNMRGGI
GNDTYFVDNT GDIVDEAADS GAGTDTVQST VSFNLGNTAV AKGGVENLVL LGTGNINGTG
NALNNTLSGN TGNNTFSGFA GNDTIDGGLG NDLINGGLGN DSLTGGAGLD TFNFSNALDA
TNNVDTINGF VVADDTIRLE NAVFTGIVGT GTLTAAQFVT NTTGLAADAD DRIIYDSDTG
RLLYDSDGDG AGGSVHFATV GTNLGMTASD FFVV
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