| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4986 |
|---|
| Symbol | |
|---|
| ID | 5318799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1499572 |
|---|
| End bp | 1500444 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640776768 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001313700 |
|---|
| Protein GI | 150377104 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0200727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTGG CAAATCTGAC GTCTTCCCCC ACCGACGCCA AATACGAGAT CGCCCACCTT
AAACTGGTGC CCAAGCGTCA CATCGGCAGA ATGGTTGCGG CTGGCATCGT GCTCTTGCTG
CTTGCCGGCC TCGTGCGGGC ATTCAGCGTC GGCCAGATCG AATGGAGCTA CGTCCGCGAT
TTCCTCTTTG CCCCGGCGAT CCTCGCAGGC CTCTACAACA CCTTGCTGAT GACCATCGCC
GCCATGGGAG TCGGCATCGT TCTCGGCGTC GTCATCGCCA TCATGCGGAT TTCGGGCAAT
CCGGTGCTGT CGTCGATCGC CATCGGCTAT GTTTGGGTCT TTCGGGGGGC GCCGGCGCTG
CTGCAACTGA TGCTGTGGTT CAACCTCGCG CTGATCTTTC CGACGCTCGG CATTCCCGGA
CTGTTTGAAT TCCGGACGGT CGACGTCATG ACGCCCTTCG TGGCCGCCGT TCTCGGTCTC
GGCCTTTCGC AGGGCGCCTA TACGTCGGAG GTGGTGCGCA GCGGACTTCT GTCAGTCGAC
AGCGGCCAGT ACGAGGCCGC GCGCACGATC GGCATGACCC AGATGATGAT GCTGCGCCGT
ATCGTCCTGC CGCAGGCCAT GCGCGTGATG GTGCCGCCGG TCGGCAACGA GGTGATCGGC
ATGGTGAAGC TGACGTCGCT CGCGAGCGTC ATCCAGTATT CCGAGATCCT GCACAACGCC
CAGATCATCT ATTTCGCCAA TACCCGCGTG CTCGAACTGC TGCTGGTGGC GAGCTTCTGG
TACCTGCTCG TCGTTTCCGT GCTCTCGGTC GGCCAGCACT ATATCGAGCG CTATTTCGGC
CGCGGTTCGA AATCGATACG CTCGTCCATG TGA
|
|---|
| Protein sequence | MNVANLTSSP TDAKYEIAHL KLVPKRHIGR MVAAGIVLLL LAGLVRAFSV GQIEWSYVRD
FLFAPAILAG LYNTLLMTIA AMGVGIVLGV VIAIMRISGN PVLSSIAIGY VWVFRGAPAL
LQLMLWFNLA LIFPTLGIPG LFEFRTVDVM TPFVAAVLGL GLSQGAYTSE VVRSGLLSVD
SGQYEAARTI GMTQMMMLRR IVLPQAMRVM VPPVGNEVIG MVKLTSLASV IQYSEILHNA
QIIYFANTRV LELLLVASFW YLLVVSVLSV GQHYIERYFG RGSKSIRSSM
|
|---|
| |