| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4966 |
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| Symbol | |
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| ID | 5318481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1479807 |
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| End bp | 1481120 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640776748 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001313680 |
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| Protein GI | 150377084 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0224202 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTGT TGCATCTCGC CGGCCCCTCG CTTCTGGTCG TCGTGCTGTT CTTGCTGTCG
ACGCCGATCA CCTGGGCCAT GGCGATCGGG GCGCTGGCCT TCTTTCTCAT CAATATGGAC
ATGATCCCGC TGGCCAACTT CGCGCAAGAA GTGGCGGAGG GCACTCAATC CGTATCCCTG
TTGGCCCTGC CGCTATTTGT GCTTGCCGGC TGTATCATGA ACGCATCCGG CATCACCCGG
CGTTTGTTGA CGCTTGCAGA CGTGCTGGTC GGCCACATGA CCGGCGCGCT GGCGCAGATG
TGCACGGTAC TCGGCACCTT GCTCGGCGGC CTTACTGCGT CTGCGAATGC CGATGCGGCG
ATGCTCGCCA AAACGCTCGG CGTCGAGATG TCTGAAAGAG GCTATAGCCG CGCCTTCGCT
GCGGTCATCA CGTCCTCGGC GGCCATCATC ACCAGCCTTA TTCCGCCCTC CATCGGCCTG
ATCGTTTATG GCTTTCTGGC GGAGACTTCC ATCGGCCGGC TCTTCGCGGC GGGGGTGGTG
CCCGGCCTCC TTCTGGCAGC CGGGCTGATG GTGACCACCT ATTTCATCGC CCGCAAGCGT
GACTACAAAC CGCTGCGCAA GCAGCGCGCC ACCCGCGCGG AGGCGACCCG GGCGCTGATC
GACGGCCTCT GGGCGCTGTC GATCCCGGTG GTGATCTTCG CGGGTACGCG GTACGGTCTT
TTCACGACCA CCGAAGCCGG TGCCGTGGTC GTCGTGTACG TGCTCTTTGT CGCTGTGTTC
GGCTACCGGG AGTTCACCGT CCGCCAGATT CCGGAGGTTT TGGCCGAAGC TGTACGCGAT
TCAGCCGTGG TGATGATCAT GATCTGCGCG GCGGCAGCCT TCGGTTTCTA TCTCGCCTGG
GAGCAGGTGC CGCAGGCCAT GTCGGGCTGG CTCGGCGAAG CGACGGACAA CCCGCTCCTG
ATGCTGCTCC TCATCAACGT GCTGCTGATC GTCATCGGGA CGGCAATCGA GGGATCGGCG
GCGCTGATCA TCCTCACGCC GATGCTGATT CCTCTCATCG ACGGCGTAGG CATCGATCGC
GTGCATTTCG GCATCGTCTT CATCACCAAT CTGACCATTG CCGGTATTAC ACCGCCGGTT
GGGGGGCTGA TGTATATTTC GTCCATGGTG CTGAAGGTGC CGATGATGGC CTATGCACGC
GAGGTGCTGC CCTATCTGGC GATGATGATG GCCCTTCTCA TCGTGCTGAG CATGTTTCCG
CAACTGTCGC TTTGGTTGCC TGATCTGGTC TATGGGACGT CCGCGGTCCA ATAG
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| Protein sequence | MTLLHLAGPS LLVVVLFLLS TPITWAMAIG ALAFFLINMD MIPLANFAQE VAEGTQSVSL
LALPLFVLAG CIMNASGITR RLLTLADVLV GHMTGALAQM CTVLGTLLGG LTASANADAA
MLAKTLGVEM SERGYSRAFA AVITSSAAII TSLIPPSIGL IVYGFLAETS IGRLFAAGVV
PGLLLAAGLM VTTYFIARKR DYKPLRKQRA TRAEATRALI DGLWALSIPV VIFAGTRYGL
FTTTEAGAVV VVYVLFVAVF GYREFTVRQI PEVLAEAVRD SAVVMIMICA AAAFGFYLAW
EQVPQAMSGW LGEATDNPLL MLLLINVLLI VIGTAIEGSA ALIILTPMLI PLIDGVGIDR
VHFGIVFITN LTIAGITPPV GGLMYISSMV LKVPMMAYAR EVLPYLAMMM ALLIVLSMFP
QLSLWLPDLV YGTSAVQ
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