Gene Smed_4963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4963 
Symbol 
ID5318478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1477253 
End bp1477912 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content60% 
IMG OID640776745 
Productperoxidase 
Protein accessionYP_001313677 
Protein GI150377081 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0450] Peroxiredoxin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.419029 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.00950513 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCCTGC GCATTAACGA CACTGCCCCT GATTTCACTG CCGAGACAAC GCAGGGTACG 
ATCAACTTCC ATGAATGGAT CGGCGACGGC TGGGCTGTTC TCTTCTCCCA TCCGAAGAAT
TTCACCCCCG TCTGCACGAC GGAGCTCGGC GCGATGGCCG GGATCGAGCC GGAGTTCCGG
AAGCGCGGCG TAAAGATCAT CGGTATCTCG GTGGATCCGG TCGAAAGTCA CACCAAATGG
AAGAACGACA TCAAGGTGGC AACCGGCTTC GATGTCGACT ATCCGCTGAT CGGCGACCGC
GATCTGAAGG TGGCAAAGCT TTACGACATG CTGCCCGCCG GCGCCGGCGA CACGTCCGAG
GGCCGAACGC CTGCGGACAA CGCCACGGTG CGTTCGGTCT ATGTCATCGG CCCGGATAAG
AAGATCAAGC TGATCCTCAC CTATCCGATG ACCACAGGCC GTAACTTCAA CGAGATACTG
CGCGCCATTG ACTCGATCCA ACTCACTGCC CGGCATCAGG TGGCAACGCC CGCCAACTGG
CAGCAGGGCG ACGACGTCAT CATCACGGCG GCCGTTTCCA ACGAAGATGC CGTTCAACGC
TTCGGCTCCT TCGACACCGT GCTTCCCTAC CTGCGGAAGA CGAAACAACC GACGGCCTAA
 
Protein sequence
MSLRINDTAP DFTAETTQGT INFHEWIGDG WAVLFSHPKN FTPVCTTELG AMAGIEPEFR 
KRGVKIIGIS VDPVESHTKW KNDIKVATGF DVDYPLIGDR DLKVAKLYDM LPAGAGDTSE
GRTPADNATV RSVYVIGPDK KIKLILTYPM TTGRNFNEIL RAIDSIQLTA RHQVATPANW
QQGDDVIITA AVSNEDAVQR FGSFDTVLPY LRKTKQPTA