Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_4963 |
Symbol | |
ID | 5318478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009620 |
Strand | + |
Start bp | 1477253 |
End bp | 1477912 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640776745 |
Product | peroxidase |
Protein accession | YP_001313677 |
Protein GI | 150377081 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0450] Peroxiredoxin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.419029 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00950513 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCTGC GCATTAACGA CACTGCCCCT GATTTCACTG CCGAGACAAC GCAGGGTACG ATCAACTTCC ATGAATGGAT CGGCGACGGC TGGGCTGTTC TCTTCTCCCA TCCGAAGAAT TTCACCCCCG TCTGCACGAC GGAGCTCGGC GCGATGGCCG GGATCGAGCC GGAGTTCCGG AAGCGCGGCG TAAAGATCAT CGGTATCTCG GTGGATCCGG TCGAAAGTCA CACCAAATGG AAGAACGACA TCAAGGTGGC AACCGGCTTC GATGTCGACT ATCCGCTGAT CGGCGACCGC GATCTGAAGG TGGCAAAGCT TTACGACATG CTGCCCGCCG GCGCCGGCGA CACGTCCGAG GGCCGAACGC CTGCGGACAA CGCCACGGTG CGTTCGGTCT ATGTCATCGG CCCGGATAAG AAGATCAAGC TGATCCTCAC CTATCCGATG ACCACAGGCC GTAACTTCAA CGAGATACTG CGCGCCATTG ACTCGATCCA ACTCACTGCC CGGCATCAGG TGGCAACGCC CGCCAACTGG CAGCAGGGCG ACGACGTCAT CATCACGGCG GCCGTTTCCA ACGAAGATGC CGTTCAACGC TTCGGCTCCT TCGACACCGT GCTTCCCTAC CTGCGGAAGA CGAAACAACC GACGGCCTAA
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Protein sequence | MSLRINDTAP DFTAETTQGT INFHEWIGDG WAVLFSHPKN FTPVCTTELG AMAGIEPEFR KRGVKIIGIS VDPVESHTKW KNDIKVATGF DVDYPLIGDR DLKVAKLYDM LPAGAGDTSE GRTPADNATV RSVYVIGPDK KIKLILTYPM TTGRNFNEIL RAIDSIQLTA RHQVATPANW QQGDDVIITA AVSNEDAVQR FGSFDTVLPY LRKTKQPTA
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