Gene Smed_4938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4938 
Symbol 
ID5318265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1448988 
End bp1449344 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content58% 
IMG OID640776721 
Productputative 6-pyruvoyl tetrahydropterin synthase 
Protein accessionYP_001313653 
Protein GI150377057 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0720] 6-pyruvoyl-tetrahydropterin synthase 
TIGRFAM ID[TIGR00039] 6-pyruvoyl tetrahydropterin synthase/QueD family protein
[TIGR03367] queuosine biosynthesis protein QueD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0732019 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.41518 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCGCA TCACCAAGGA ATTCCATTTC TCCGCCTCGC ATCAGTTGAA GAACCTGCCT 
CCCGAGCATC AATGCGCGCG GCTGCACGGG CACAACTACA TCGTCGAGGT CGAGCTTTCG
GGCGAAACGT TGAACGAGCA TGGTTTCGTG CGCGACTATC ACGAGCTTGC GCCTCTGAAG
ACGTATATCG ATGAGGCCTT TGACCACCGC CACCTGAACG ACGTGCTCGG GCACGACCGG
GTGACGGCGG AATGTCTGGC ACGGCATTTC TACGAATGGT GCAAGGCTCG TCTTTTCGAA
ACAACGGCCG TTCGCGTCAG CGAGACGGCA AAGACCTGGG CGGAATACCG GCCATGA
 
Protein sequence
MFRITKEFHF SASHQLKNLP PEHQCARLHG HNYIVEVELS GETLNEHGFV RDYHELAPLK 
TYIDEAFDHR HLNDVLGHDR VTAECLARHF YEWCKARLFE TTAVRVSETA KTWAEYRP