| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4903 |
|---|
| Symbol | |
|---|
| ID | 5317880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1412815 |
|---|
| End bp | 1414074 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640776687 |
|---|
| Product | RNA-directed DNA polymerase (Reverse transcriptase) |
|---|
| Protein accession | YP_001313619 |
|---|
| Protein GI | 150377023 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.791512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.702459 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCGA TAGATACGAC AGACAAGCCG TTTCGAATTG AGAAGCGGCA AGTGTACGAA
GCTTACAAAG CGGTCAAAGC CAACCATGGC GCAGCCGGAG TGGACGGTGA GACCTTGGAG
ATGTTCGAGA AAGACCTTGC GAGAAATCTC TACAAGATCT GGAATCGGAT GTCGTCCGGG
ACCTACTTTC CGCCACCGGT GCGCGCCGTC TCCATTCCGA AGAAGACTGG TGGCGAAAGG
GTTTTGGGTG TGCCCACGGT CAGCGATCGG ATCGCGCAGA TGGTGGTCAA GCAGATGATT
GAGCCGGATT TGGATTCCCT CTTTCTTCCG GACTCCTACG GATACAGGCC GGGAAAATCG
GCGTTGGATG CCGTTGGGGT GACGCGTCAG CGGTGCTGGA AGTACGATTG GGTTCTGGAA
TTCGACATCA AAGGGCTGTT TGACAATCTT CCGCATGATC TCTTGCTGAA GGCGGTCAGA
AAGCACGTCA AATGCAACTG GGCTCTGCTC TACATCGAAA GATGGCTGGT CGCGCCCATG
GAAAAGAACG GAGCAGTCAT TGAGCGCACA CGTGGTACCC CGCAAGGGGG CGTGGTCAGC
CCAATCCTCT CGAATCTCTT CCTGCATTAC GCGTTCGACG TCTGGATGAC TCGGACGCAC
CCTGATCTTC CATGGTGTCG GTATGCCGAT GATGGTCTCG TGCACTGCCG GACCGAGCAA
GAAGCACAGG CCCTCAAGGC TGCGCTTCAA GCCCGGCTGG CAGAATGCGG ACTTCAGATG
CATCCGATCA AGACCCAGAT CGTCTACTGC AAAGATAATC GGCGTCGGAA AAGGTATCCG
ACCGTCAAAT TTGACTTCCT TGGATACCAA TTCCGGCCGC GACAGGTGGC GACGGCGCAG
CAGGATGAGT TCTTCTGCGG CTACACCCCG GCGGCCAGCC CGACGGCGCT AAAGTCGATG
CGGGCCACGA TCAAGAGCTT GAACATTCCG CGGCAAACGC CGGGGACGCT GGCTGAAATC
GCCAAACAGA TCAATCCGCT CCTGCGGGGA TGGATTGCCT ATTATGGGCG GTTCAGTCGT
TCGGCCCTGT TCTCTCTGGC TGACTACATC AATCGGAAGC TCAAGGCCTG GATTATGCGA
AAGTACAAGC GCTTTCGGTT CCACAAAACT CGGGCTTCGC AGTTCTTGCG GCAACTTGCT
CGAGATAATC GGGGCCTCTT CGTACACTGG CAGGCGTTCG GAACGAACCT GTTTGCCTGA
|
|---|
| Protein sequence | MTSIDTTDKP FRIEKRQVYE AYKAVKANHG AAGVDGETLE MFEKDLARNL YKIWNRMSSG
TYFPPPVRAV SIPKKTGGER VLGVPTVSDR IAQMVVKQMI EPDLDSLFLP DSYGYRPGKS
ALDAVGVTRQ RCWKYDWVLE FDIKGLFDNL PHDLLLKAVR KHVKCNWALL YIERWLVAPM
EKNGAVIERT RGTPQGGVVS PILSNLFLHY AFDVWMTRTH PDLPWCRYAD DGLVHCRTEQ
EAQALKAALQ ARLAECGLQM HPIKTQIVYC KDNRRRKRYP TVKFDFLGYQ FRPRQVATAQ
QDEFFCGYTP AASPTALKSM RATIKSLNIP RQTPGTLAEI AKQINPLLRG WIAYYGRFSR
SALFSLADYI NRKLKAWIMR KYKRFRFHKT RASQFLRQLA RDNRGLFVHW QAFGTNLFA
|
|---|
| |