| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4897 |
|---|
| Symbol | |
|---|
| ID | 5318235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1406561 |
|---|
| End bp | 1409044 |
|---|
| Gene Length | 2484 bp |
|---|
| Protein Length | 827 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776682 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_001313614 |
|---|
| Protein GI | 150377018 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase
[COG2608] Copper chaperone |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.248025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.348601 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAC TGAAACAGAC CGAAAAATCC ACATCGCTTC CGATGTCCTT CGATTTCGAC
ATCGAAGGTA TGACGTGTGC CTCATGTGTA CGACGCGTCG AAAAGGCCAT CGCCGCGGTG
CCGGGCGTCG CTTCTGCGAA CGTCAACCTG GCCACGGAGC GCGCGACGGT TCAGTTCAAT
GGAGTGCCCG AAACGACATC CGTGCTCCGC GCGGTCGAGA AAGCCGGCTA CGCGCCGAGG
ATCGTAACCG AGGAAATCCA GATCGAAGGC ATGACTTGCG CTTCGTGTGT TTCCCGCGTC
GAGAAGGCGC TGAAGGCCGT TCCCGGCGTT GCCGATGCAT CCGTGAACCT TGCCACGGAG
AAGGCGACCG TGCGGCTGGT TTCCGGAAGC GCCGAGATTT CGGCCCTCGC GGCCGCGGTC
AAAGGGGCGG GCTACGGTAT TCGGAAGGCG ACGCCTGCCG AAGCCATGAA GGAAGATGTG
GATCACCGCA CAGCCGAGCT CCGCTCTCTG AAATCCGCAG TGACGATTTC GTCGCTGATG
ACCCTTCCGC TTTTCCTGCT CGAAATGGGA TCGCACTTCA TTCCCGGCGT CCATGACTTC
ATCATGGGCA CGATCGGTAT GCGCAACAAT CTCTATCTTC AATTTGCGCT CGCCACGCTC
GTCCTGTTCG GACCGGGGCT GCGCTTCTTC AGGAAGGGCG TGCCGAACTT GCTGCGCTGG
ACACCCGACA TGAACTCGCT GGTCGTTCTC GGGACGACCG CAGCCTGGGG CTATTCCGTC
GTGACGACTT TCGTTCCCGC GATACTGCCC TCCGGGACGG CGAACGTCTA TTACGAGGCT
GCCGCCGTGA TCGTCACCTT GATTCTCGTC GGCCGCTATC TCGAGTCGCG GGCAAAAGGC
CGCACCAGTC AGGCCATCAA GCGTCTCGTC GGGCTGCAGC CGAAGACGGC CTTCGTTTTG
CATAGCGGCG AATTCGTCGA GACTGAGATC ACTGAGGTCG TAACCGGTGA CGTGATCCGG
ATCCGGCCGG GTGAGAAGAT CCCCGTGGAC GGCACAGTCA CGGACGGCAG CTCCTATGTG
GATGAGTCGA TGATTACCGG TGAGCCTGTT CCCGTTCAAA AAGCCACGGA CAGTGCTGTG
ATCGGCGGTA CGATCAACAA GACCGGCTCC ATCACCTTCA AGGCCACCAA GGTCGGCAGC
GACACACTGC TGGCGCAGAT CATCAGACTG GTCGAAGCCG CTCAGGGCTC GAAGCTGCCG
ATCCAGGCGC TGGTGGACAG AGTTACCGCA TGGTTCGTCC CGGTGGTAAT CCTGGCGGCA
TTGCTGACCT TTGCTGCCTG GTACGTGCTT GGCCCCTCCC CTGCGCTCTC GTTCGCCCTC
GTGAATGCCG TAGCGGTCCT CATCATCGCC TGCCCATGTG CCATGGGCCT GGCGACGCCG
ACCTCGATCA TGGTCGGCAC CGGCCGCGCG GCGGAGCTCG GCATCCTTTT CCGCAAAGGG
GAGGCTCTAC AGAGCCTTCG CGACGCCGAC GTCGTCGCGG TCGATAAGAC AGGGACGTTG
ACGAAGGGCC GTCCCGAGCT GACCGATCTC GTCGCCGCTG AGGGTTTTGA GCCGGACGAA
GTGCTCTGCC TTGTCGCAAG CCTCGAAACG CTTTCGGAAC ACCCGATCGC GGAGGCAATC
GTGTCGGCGG CGAAGTCCAG GGGGATAGCA ACGGTTGCCG TCAGCGCCTT TGAAGCGACG
CCGGGATTTG GCGTAAGCGG GACTGTTTCC GGACGGCGGG TGCTCGTCGG CGCCGACCGC
GCGCTCGTCA AGAACGGAAT AGATATTACC GGCTTCGCAG ATGAAGCGGA ACGCCTCGGC
AGCGGCGGCA AATCACCGCT CTATGCGGCC ATCGACGGGC GGCTGGCGGC GATCGTCGCG
GTTTCGGACC CGGTCAAGGA AAGCACACCT CAGGCAATCA AATCCCTGCA TGCACTCGGC
TTGAAAGTGG CGATGGTCAC CGGAGACAAC CGCCGCACTG CCGAGGCGAT TGCCAAAAAG
CTCGGCATCG ATGAGGTCGT CGCCGAGGTG CTGCCGGAAG GCAAGGTGGA CGCGGTGAGA
AAGCTCCGTC AGGGCGGCCG CTCGGTCGCC TTCATCGGCG ACGGCATCAA TGATGCGCCG
GCTCTGGCCG AAGCGGATGT TGGCATCGCC GTGGGCACCG GAACCGATAT CGCCATTGAA
AGCGCCGATG TCGTGCTGAT GTCAGGAGAC TTGAACGGCG TTGCGAAGGC GCTCGCGCTC
AGCAAGGCAA CGATCCGCAA CATCAAGCAG AACCTGTTCT GGGCCTTCGT CTATAACATC
AGTCTGGTGC CCGTCGCGGC CGGCGTTCTT TACCCCGTGA ACGGCACCCT GCTCTCGCCG
ATCTTTGCGG CGGCGGCCAT GGCGATGTCG AGCGTCTTTG TTCTTGGCAA TGCGCTGCGG
CTGAAATCGT TCGATCCGGC CTAG
|
|---|
| Protein sequence | MTALKQTEKS TSLPMSFDFD IEGMTCASCV RRVEKAIAAV PGVASANVNL ATERATVQFN
GVPETTSVLR AVEKAGYAPR IVTEEIQIEG MTCASCVSRV EKALKAVPGV ADASVNLATE
KATVRLVSGS AEISALAAAV KGAGYGIRKA TPAEAMKEDV DHRTAELRSL KSAVTISSLM
TLPLFLLEMG SHFIPGVHDF IMGTIGMRNN LYLQFALATL VLFGPGLRFF RKGVPNLLRW
TPDMNSLVVL GTTAAWGYSV VTTFVPAILP SGTANVYYEA AAVIVTLILV GRYLESRAKG
RTSQAIKRLV GLQPKTAFVL HSGEFVETEI TEVVTGDVIR IRPGEKIPVD GTVTDGSSYV
DESMITGEPV PVQKATDSAV IGGTINKTGS ITFKATKVGS DTLLAQIIRL VEAAQGSKLP
IQALVDRVTA WFVPVVILAA LLTFAAWYVL GPSPALSFAL VNAVAVLIIA CPCAMGLATP
TSIMVGTGRA AELGILFRKG EALQSLRDAD VVAVDKTGTL TKGRPELTDL VAAEGFEPDE
VLCLVASLET LSEHPIAEAI VSAAKSRGIA TVAVSAFEAT PGFGVSGTVS GRRVLVGADR
ALVKNGIDIT GFADEAERLG SGGKSPLYAA IDGRLAAIVA VSDPVKESTP QAIKSLHALG
LKVAMVTGDN RRTAEAIAKK LGIDEVVAEV LPEGKVDAVR KLRQGGRSVA FIGDGINDAP
ALAEADVGIA VGTGTDIAIE SADVVLMSGD LNGVAKALAL SKATIRNIKQ NLFWAFVYNI
SLVPVAAGVL YPVNGTLLSP IFAAAAMAMS SVFVLGNALR LKSFDPA
|
|---|
| |