| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4878 |
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| Symbol | |
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| ID | 5318925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 1384151 |
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| End bp | 1385314 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640776663 |
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| Product | ABC transporter related |
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| Protein accession | YP_001313595 |
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| Protein GI | 150376999 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR03265] putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.211799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.53709 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATG CAACAGCCCC AGCGGAACCG GCCATGCCCG TGTCCGCCAA CCGTCAGAGC
GAAAGACGAC CATTCCTCGA AATCAGCGGG CTGTGGAAAG CCTATGGCGA TTTCGTCGCG
CTACGAGACA TAGACCTCCA GGTGAAGGAG GGTGAATTCG TCTGTTTCCT CGGGCCCTCG
GGCTGCGGGA AAACTACGCT TCTGCGCGCC ATCGCCGGGT TGGACATACA GTCTCGAGGC
GCCATCCGCC AAGCCGGACA GGATATCTCG CGCCTGCCGC CGGCACAGCG CGACTATGGC
ATCGTCTTCC AGTCCTACGC GCTCTTTCCG AATCTCACGA TCGAAAAGAA CATCGCATTC
GGACTCGAAA ATATCGGCCG GCCTCGCCGC GAAATAGCCT CGCGCGTCTC CGACCTTCTG
GACCTCGTCG GCTTGAGCAG CCAAGGACGG AAATACCCGG CTCAACTATC CGGCGGTCAG
CAGCAGCGCG TAGCGCTTGC CCGCGCCATG GCGATTTCTC CCGGGCTCCT GCTTCTCGAC
GAGCCTCTGT CGGCGCTCGA CGCGAAGGTG CGCGTCCACC TGAGGCATGA GATCAAGGAG
CTGCAGCGCA AGCTTGGTGT CACCACGATC ATGGTTACGC ACGACCAGGA AGAAGCGCTG
TCCATGGCCG ACCGCATCGT CGTGATGAAC CAGGGTGGTA TCGAACAGGT TGGAACGCCG
ACTGAGATCT ATCGCCATCC GAGAACGCTT TTCGTCGCCG ACTTCATCGG GGAGACCAAC
CAGTTTCCCG CAACGGTCGG TAAGGGCGCG CAGGTCGAAA TAGGGCACAC TCGGTTTGCC
TGTGCGGAAC ACCTGTTGCC CGCCGGTGCG GCGGTCGTTG CCGCGGTCCG GCCGGCGGAT
ATCATTCCGC ACGGCGCCGA CGCCCACCGG GCAACCGGGC TCGAGGCCGT GGGCAACGCC
GACAATCTAA TCGACGCACA TGTGGAGGAT ATGGAATTTC TCGGCATGTT CTGGCGCACA
CGGCTCTCAG CCCCGCGTCT GAAGGAGACG CCTCTCGTGG CGGATTTCTC TACGAACGCG
GTTCGCCGGC TTTGCATCGA GATCGGCAGC GCCATCCAGG TTGAAATTCC GCAGGAGCGT
CTGCTCCTAT TTGCAAAGGC CTGA
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| Protein sequence | MKHATAPAEP AMPVSANRQS ERRPFLEISG LWKAYGDFVA LRDIDLQVKE GEFVCFLGPS
GCGKTTLLRA IAGLDIQSRG AIRQAGQDIS RLPPAQRDYG IVFQSYALFP NLTIEKNIAF
GLENIGRPRR EIASRVSDLL DLVGLSSQGR KYPAQLSGGQ QQRVALARAM AISPGLLLLD
EPLSALDAKV RVHLRHEIKE LQRKLGVTTI MVTHDQEEAL SMADRIVVMN QGGIEQVGTP
TEIYRHPRTL FVADFIGETN QFPATVGKGA QVEIGHTRFA CAEHLLPAGA AVVAAVRPAD
IIPHGADAHR ATGLEAVGNA DNLIDAHVED MEFLGMFWRT RLSAPRLKET PLVADFSTNA
VRRLCIEIGS AIQVEIPQER LLLFAKA
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