| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4875 |
|---|
| Symbol | |
|---|
| ID | 5318922 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1380029 |
|---|
| End bp | 1381303 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776660 |
|---|
| Product | phosphonoacetate hydrolase |
|---|
| Protein accession | YP_001313592 |
|---|
| Protein GI | 150376996 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1524] Uncharacterized proteins of the AP superfamily |
|---|
| TIGRFAM ID | [TIGR02335] phosphonoacetate hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.546493 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA TGTCCAAAAT TTCGGTAACG GTTAATGGCC GCCGCTATCC ATGGCCCCGC
GTTCCGGCAA TTGCGATCTG CCTCGACGGG TGCGAGCCCG CCTATCTCGA TGCGGCGATG
GAGGCGGGAT TGATGCCCGC CCTCAAGCGC ATCAAGGAAC GCGGTGCCGT GCGGCTGGCG
CACAGCGTCA TTCCGAGCTT CACAAATCCC AACAATCTTT CGATCGCAAC GGGAACTCCG
CCGGCCGTCC ACGGGATCTG CGGCAACTAC CTTTACGAGC CTGCGACGGG CGAAGAGGTG
ATGATGAACG ACCCGAAGTT CCTTCGCGCG CCGACCATTT TCCAGGCCTT CTACGACGCC
GGCGCGCGGG TCGCGGTCGT CACGGCGAAG GATAAGCTTC GCGCGCTTCT CGGAAAGGGG
CTTCGTTTCG ACGAAGAACG CGCGATCTGC TTCTCGTCTG AAAAATCGGA CAAGGCGACG
CCCGAGGAAC ATGGCATCGA CAATGCCTCG GGCTGGCTCG GCCGGCCGGT TCCGGAAGTC
TATTCGGCAG CGCTTTCGGA ATTCGTCTTC GCTGCGGGCG TGAAACTGCT CAAGGAGTTC
CACCCCGACA TCATGTATCT GACCACGACG GACTATGTTC AGCACAAATA CGCTCCCGGC
GTAGCGGAGG CCAACGCCTT TTACGCGATG TTCGATCGCT ACCTGTCAGA GCTGGACGGA
CTAGGAGCGG CCATCGTCGT CACCGCTGAT CACGGCATGA AGCCGAAGCA CAAGGCGGAC
GGCTCGCCCG ACGTCATCTA TGTCCAGGAC CTGCTCGATG AGTGGTTGGG CGAGGAAGCG
GCCCGTGTCA TCCTGCCGAT CACCGATCCA TATGTCGTGC ACCACGGCGC GCTCGGATCC
TTCGCCACCG CCTATCTCCC CGGGCAATGC GACCGCGGAG AGATCATCGA TCGGCTAAAG
GCGCTCGATG GCATCGACGT CGTGCTGGAC CGCGAAGAGG CATGCCGAAG GTTTGAGCTC
CCGGAGGATC GCATCGGCGA CATTGTCCTC GTTTCGTCCG AAAACAAGAC ACTCGGCACC
AGCGAGCACC GCCACGACCT GGCGGCACTG GACGAGCCGT TGCGCTCCCA TGGCGGCCTC
ACAGAGCAGG AGGTTCCCTT CATCGTCAAC CGGGTGCTGC CCGATCTCCC GGGCGCTCCT
TGTCTTCGCA ACTTCGATGC GTTCTTCTAC GCTGTTGCGG CAGCGGCGTT GATCAGTGCG
GAGGACGCGA TATGA
|
|---|
| Protein sequence | MNQMSKISVT VNGRRYPWPR VPAIAICLDG CEPAYLDAAM EAGLMPALKR IKERGAVRLA
HSVIPSFTNP NNLSIATGTP PAVHGICGNY LYEPATGEEV MMNDPKFLRA PTIFQAFYDA
GARVAVVTAK DKLRALLGKG LRFDEERAIC FSSEKSDKAT PEEHGIDNAS GWLGRPVPEV
YSAALSEFVF AAGVKLLKEF HPDIMYLTTT DYVQHKYAPG VAEANAFYAM FDRYLSELDG
LGAAIVVTAD HGMKPKHKAD GSPDVIYVQD LLDEWLGEEA ARVILPITDP YVVHHGALGS
FATAYLPGQC DRGEIIDRLK ALDGIDVVLD REEACRRFEL PEDRIGDIVL VSSENKTLGT
SEHRHDLAAL DEPLRSHGGL TEQEVPFIVN RVLPDLPGAP CLRNFDAFFY AVAAAALISA
EDAI
|
|---|
| |