| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4746 |
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| Symbol | |
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| ID | 5319114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | - |
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| Start bp | 1267446 |
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| End bp | 1268729 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640776544 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001313476 |
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| Protein GI | 150376880 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.001349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGATATGA TGATCCTCTT CGGCGTATTC ACGCTGCTGA TGCTGATCGG AACGCCGATC
GCCTTCTGCC TCGGCGTCGC GTCCTTCGCG ACCGTGCTCT ATCTCGGCCT GCCGCCGCTG
GTGATCTTTC AGCGGCTCAA TTCCGGCATG AGCGTGTTCT CACTGCTTGC CATTCCGTTC
TTCATCTATG CAGGGGACCT GATGGTGCGC GGCGGAATCG CCCAGAAAAT AGTGGCCTTT
GCGGCCTCGC TCGTCGGACA CATCCGCGGC GGTCTCGGCC AGGTCAATAT CGTCACTGCG
ACCTTGTTCG GGGGCATTTC GGGGTCCGCC GTGGCCGAAG CAGCGGCGGT GGGCGGGCTC
ATGATCCCGC AGATGAAGCA GCGCGGCTAT GGCGCAGATT ACGCCGTCAA CATTACATCG
ATGGCGGCTC TGATCGCGCT GATGCTGCCA CCGTCGCACA ACATGATCAT CTACTCGATA
TCGGCGGGCG GGAAGATCTC TATCGCAGAT CTCTTCACCG CCGGTATCCT CCCCGGTCTC
CTCTATGCGG CCGCGCTGAT GGTGACCGCC TATTTCGTCG CGCGGCGGCG GGGCTACCCG
ACGGAGGTCT TTCCCGGCTT CGCCAGGGTC GGCCGCTATC TGCTGGTCTC GACGCCCGGC
CTCCTGCTCA TCGGCATCAT CTTCGGTGGC GTACGTTCGG GTGTGTTCAC TGCGACCGAA
AGTTCCTGCA TCGCCGTTCT CTATGCGCTC GCGGTAACCG TCTTCGTCTA TCGGCAGATG
ACCTGGCGCG ATTTCGTCCA GGCCACATTC GCGGCCGTGC GCACGACGGC CATGGTCCTG
CTCATCATCG GCATGGCGGC CGCCTTTTCC TGGCTGATGG CATTCCTGAG AGTGCCTGCA
GCGCTGATCG ACTGGATGAA CACGATTTCG GAGAATCCGA TCATCGTTCT CCTTTTGCTC
AATGTCCTGA TGCTGTTTCT AGGAACCTTC ATGGACATGG GGCCCACCAT CATAATCTGC
ACGCCGATTT TCCTGCCGGT GGCCATGGCC TACGGCGTCG ATCCGGTTCA TTTCGGCGTC
ATCATGATCC TGAACTTCGG CATCGGCCTG AACACACCGC CGGTAGGGGC CGTGCAGTTT
GTGGCCTGCG CAGTCGGAAA AATCTCCGTC TGGGAGGCGA TGCGCAGCAT CTGGCCCTTC
TACATGGCGG GGTTGATCGT CCTTGGGCTC GTCACCTATG TTCCGGCCCT TTCGCTATGG
CTGCCAGCCG TCTTCAAAGG GTGA
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| Protein sequence | MDMMILFGVF TLLMLIGTPI AFCLGVASFA TVLYLGLPPL VIFQRLNSGM SVFSLLAIPF
FIYAGDLMVR GGIAQKIVAF AASLVGHIRG GLGQVNIVTA TLFGGISGSA VAEAAAVGGL
MIPQMKQRGY GADYAVNITS MAALIALMLP PSHNMIIYSI SAGGKISIAD LFTAGILPGL
LYAAALMVTA YFVARRRGYP TEVFPGFARV GRYLLVSTPG LLLIGIIFGG VRSGVFTATE
SSCIAVLYAL AVTVFVYRQM TWRDFVQATF AAVRTTAMVL LIIGMAAAFS WLMAFLRVPA
ALIDWMNTIS ENPIIVLLLL NVLMLFLGTF MDMGPTIIIC TPIFLPVAMA YGVDPVHFGV
IMILNFGIGL NTPPVGAVQF VACAVGKISV WEAMRSIWPF YMAGLIVLGL VTYVPALSLW
LPAVFKG
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