| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4745 |
|---|
| Symbol | |
|---|
| ID | 5319113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | - |
|---|
| Start bp | 1266688 |
|---|
| End bp | 1267437 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640776543 |
|---|
| Product | GntR domain-containing protein |
|---|
| Protein accession | YP_001313475 |
|---|
| Protein GI | 150376879 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00100625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTTC CGACCGAACG CAAACCGAAG CTTTCCGAGC GCGTCGCAAG CTCGATCCGG
CAACAGGTTC TGAAAGGTGA AATACAGGCC GGCGAGAAGC TGCCCACGGA GAGCAGGATC
AGCGAATTCT TCGGGGTCAG CCGTACGGTC GTTCGCGAAG CGATTGCGAC ACTCGCAGCC
GATGGCCTCG TGGAGCCACG GCAGGGTGCG GGCGTTTTCG TCAAGGACCA CCCGACGATC
GCCTTCGGTG CGATCAGCCT CGACGCCAGC AACAAGATTT CCCATGCGCT CAACGTCATC
GAGGTGCGCA TGGGACTGGA GATCGAGAGC GCGGGACTTG CGGCTCTTCG ACGCAATAGC
GCGCAGGAAG CCCAGATTCA GGAGGCATTT TTCGAGTTCG ACCGGCTGCT CGAGCGTGGC
GAATCGACCG GAAAGAGCGA TTTTGCCTTC CACCGGGCGA TCGCTGCTGC GACCAACAAT
CCCTATTATG TGGAGGTTCT CGATGCGCTT GGTCTACGGG CGATCCCTTG CGATGTCAGC
TCTCCCTGGG GAACCGAGAG CGCGCTTTCG CGCGAATATC AGAAAGGCCT TCAGCGGGAG
CATCTGGTGA TCCTGCAGGC GATTTCCGGG AACAATCCGG AAGCTGCCCG TGCCGCCATG
CGTGCCCACC TGACCGCAAG CCAGGAGCGC TATCGCGCCC GGTTGAGCGG ACAGCAGGCG
GCCTGGGGCG CGGCCAGGCG CGACGCGTGA
|
|---|
| Protein sequence | MDLPTERKPK LSERVASSIR QQVLKGEIQA GEKLPTESRI SEFFGVSRTV VREAIATLAA
DGLVEPRQGA GVFVKDHPTI AFGAISLDAS NKISHALNVI EVRMGLEIES AGLAALRRNS
AQEAQIQEAF FEFDRLLERG ESTGKSDFAF HRAIAAATNN PYYVEVLDAL GLRAIPCDVS
SPWGTESALS REYQKGLQRE HLVILQAISG NNPEAARAAM RAHLTASQER YRARLSGQQA
AWGAARRDA
|
|---|
| |