Gene Smed_4742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4742 
Symbol 
ID5319110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1264619 
End bp1264954 
Gene Length336 bp 
Protein Length111 aa 
Translation table11 
GC content60% 
IMG OID640776540 
Productcupin 2 domain-containing protein 
Protein accessionYP_001313472 
Protein GI150376876 
COG category[S] Function unknown 
COG ID[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.000930389 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGATACGA AACTCTTCGC TCGAAGCACC GAAGGCGAAT GGGTCGAACT CGGACAAGGC 
AACCGACGCC GGGTGATCCT GCATACGGAC GAGCTCATGC TGGTCGAATT CGCCTTCGAG
AAAGACGGCA TCGGCGCGCC GCATTCGCAC CCGCATGTGC AGGCGAGCTA CATCGCCGAG
GGCAGGTTCG AAGTTACGGT CGGAGAACAA ACGCAGGTTC TTTCCGCCGG CGACAGTTTC
ATCGCACCTT CCGGCGTGGT CCATGGTGTT AGGGCGCTGG ACGCCGGTCG GCTGATCGAC
AGCTTCACGC CACACCGCGC CGATTTTCTG AAGTAG
 
Protein sequence
MDTKLFARST EGEWVELGQG NRRRVILHTD ELMLVEFAFE KDGIGAPHSH PHVQASYIAE 
GRFEVTVGEQ TQVLSAGDSF IAPSGVVHGV RALDAGRLID SFTPHRADFL K